View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_low_53 (Length: 268)

Name: NF3546_low_53
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_low_53
NF3546_low_53
[»] chr5 (8 HSPs)
chr5 (21-256)||(37306977-37307212)
chr5 (23-188)||(35811240-35811403)
chr5 (76-256)||(32278485-32278667)
chr5 (156-256)||(36868510-36868610)
chr5 (54-204)||(19215523-19215673)
chr5 (65-256)||(788057-788243)
chr5 (156-218)||(20817526-20817589)
chr5 (158-257)||(1442730-1442830)
[»] chr2 (6 HSPs)
chr2 (21-256)||(14296037-14296269)
chr2 (144-256)||(18811516-18811628)
chr2 (149-256)||(30180028-30180136)
chr2 (190-256)||(37344845-37344911)
chr2 (23-114)||(31092427-31092518)
chr2 (52-128)||(37344759-37344835)
[»] chr4 (6 HSPs)
chr4 (21-174)||(24239701-24239854)
chr4 (23-227)||(18522103-18522308)
chr4 (23-255)||(37050112-37050345)
chr4 (21-188)||(16831983-16832151)
chr4 (162-253)||(10046558-10046649)
chr4 (66-114)||(7500231-7500279)
[»] chr1 (5 HSPs)
chr1 (52-230)||(14344193-14344372)
chr1 (23-229)||(13061765-13061971)
chr1 (52-256)||(44163536-44163741)
chr1 (57-111)||(41034940-41034994)
chr1 (144-256)||(41034821-41034933)
[»] chr3 (4 HSPs)
chr3 (23-191)||(35526403-35526570)
chr3 (21-229)||(29346907-29347115)
chr3 (65-227)||(49106841-49107005)
chr3 (166-256)||(18028366-18028457)
[»] chr7 (5 HSPs)
chr7 (23-256)||(34547991-34548225)
chr7 (120-257)||(29132223-29132361)
chr7 (140-256)||(16099789-16099906)
chr7 (55-229)||(7543909-7544081)
chr7 (141-229)||(26180318-26180407)
[»] chr6 (5 HSPs)
chr6 (23-256)||(3949445-3949680)
chr6 (23-256)||(25167954-25168188)
chr6 (143-252)||(5605449-5605559)
chr6 (158-256)||(2606645-2606744)
chr6 (141-256)||(10990217-10990333)
[»] chr8 (5 HSPs)
chr8 (144-256)||(27786589-27786701)
chr8 (54-188)||(28225556-28225691)
chr8 (23-114)||(29369214-29369305)
chr8 (96-228)||(3801149-3801281)
chr8 (59-111)||(13885884-13885936)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 37307212 - 37306977
Alignment:
Q  21 ataatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaa 120  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37307212 ataatagttggttcaattacaaaagaataactggaaatatcaatacttttgttcaaattttcacagagagtgtagtcttgtagcagttgtttggccaaaa 37307113  T
Q  121 atgttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttccttcttgggatagatccgatttttcttttcgt 220  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37307112 atgctcattatatgactaggttttatgtacaatgatggtctttgacacctctttccttatgacatttccttcttgggatagatccgatttttcttttcgt 37307013  T
Q  221 agattttacattttatgactttgttgtattggttca 256  Q
    |||||||||||||| |||||||||||||||||||||    
T  37307012 agattttacattttgtgactttgttgtattggttca 37306977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 35811240 - 35811403
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||||||||||||||| ||  | |||| ||||||||| ||||||||||||||||||||||  | |||| |||||||| |||| |||||||| |||| |||    
T  35811240 aatagttggttcaattgcaacataatatttgggaataccaatacttttgttcaaattttc--atagagggtagtcttttagccgttgtttgaccaagaat 35811337  T
Q  123 gttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttc 188  Q
      |||| || ||||||| |||||| ||| ||| | || ||||| ||||||||||||||||||||||    
T  35811338 aatcataatttgactagtttttctttacgatgcttgtttttgatacctctttccttaggacatttc 35811403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 256
Target Start/End: Complemental strand, 32278667 - 32278485
Alignment:
Q  76 aattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatat-gactaggttttctgtacaatgatggtctttgacacctcttt 174  Q
    |||||||  |||||| |||||||| |||  ||||||||||||| |||| ||||  | | |||||| |||||||| || || | |||||||||||||| ||    
T  32278667 aattttcttagagagagtagtcttttagtcgttgtttggccaagaatggtcatacttttgactagtttttctgttcattggttgtctttgacacctcgtt 32278568  T
Q  175 ccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggttca 256  Q
    |||||||||||| | || ||||||||||||||| ||| ||||||| ||| ||||||| | | ||||| || ||||||||||||    
T  32278567 ccttaggacattccttttcttgggatagatccggtttctcttttcataggttttacactatgtgactctgatgtattggttca 32278485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 36868510 - 36868610
Alignment:
Q  156 tggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggtt 254  Q
    ||||||||||||||| |||| ||||| | ||||||| ||||||||||||||||||||||||||| ||| | |||||  || ||||| |||||||||||||    
T  36868510 tggtctttgacacctttttc-ttaggtcttttcctttcttgggatagatccgatttttcttttcataggtcttacacattgtgactgtgttgtattggtt 36868608  T
Q  255 ca 256  Q
    ||    
T  36868609 ca 36868610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 19215523 - 19215673
Alignment:
Q  54 ggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatatgactaggttttctgtacaat 153  Q
    ||||| ||||||||| | |||||||||||| |||||| | |||||| |||| ||||||||||||| ||    ||| || |||||| |||||||||| |||    
T  19215523 ggaatgtcaatacttctattcaaattttcacagagagggcagtcttttagctgttgtttggccaagaacagacataatttgacta-gttttctgtataat 19215621  T
Q  154 gatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatc 204  Q
    | | ||||||||||||| |||| ||||| | ||||| ||||||| |||||||    
T  19215622 ggttgtctttgacacctatttcattaggtcctttcctttcttggaatagatc 19215673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 256
Target Start/End: Complemental strand, 788243 - 788057
Alignment:
Q  65 acttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatatgactaggttttctgtacaatgatggtctttg 164  Q
    ||||||||||||||||    |||||| |||||||| |||| || |||||||||  |||| |||| || || |||| ||||   ||||||| | |||||||    
T  788243 acttttgttcaaatttc---agagagggtagtcttttagctgtggtttggccatgaatggtcataatttgtctagttttt---tacaatggttgtctttg 788150  T
Q  165 acacctctttcctt-aggacatttccttcttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggttca 256  Q
    |||||||||||||| ||| | || | ||||||| |||||| |  ||| ||||||  ||||||||||| | |  |||  |||||||||||||||    
T  788149 acacctctttccttaaggtctttcctttcttggaatagattcattttctctttttatagattttacactatgcgaccatgttgtattggttca 788057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 20817589 - 20817526
Alignment:
Q  156 tggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttc 218  Q
    ||||||||||||||||||||| || |||  |||||| ||| ||||||||| |||||||||||||    
T  20817589 tggtctttgacacctctttccatacgactcttcctttcttaggatagatctgatttttcttttc 20817526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 1442830 - 1442730
Alignment:
Q  158 gtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggttca 256  Q
    |||||||||||||  |||  ||||||||| |||| ||||||||||||| | ||| ||||||| ||  ||||||| | | ||||| || ||||||||||||    
T  1442830 gtctttgacaccttgttcagtaggacattccctttcttgggatagatctggtttctcttttcttatgttttacaatatgtgactctgatgtattggttca 1442731  T
Q  257 t 257  Q
    |    
T  1442730 t 1442730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 14296269 - 14296037
Alignment:
Q  21 ataatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaa 120  Q
    |||||||||||||||||| ||  ||||||| ||||||||| |||||||||||||||||||||  |||| ||  |||||||||||||||| ||||| || |    
T  14296269 ataatagttggttcaattgcaatagaataagtgggaatataaatacttttgttcaaattttcgtagagggt--agtcttgtagcagttgattggc-aaga 14296173  T
Q  121 atgttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttccttcttgggatagatccgatttttcttttcgt 220  Q
    ||| ||||||| || |||| |||||  | ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||||| |    
T  14296172 atggtcattatttgtctagtttttccctgcaatggtggtctttgacacctctttccttaagacctttccttcttgggatagatttgatttttcttttcat 14296073  T
Q  221 agattttacattttatgactttgttgtattggttca 256  Q
    || |||| || ||| ||| | || ||||| ||||||    
T  14296072 aggtttttcactttgtgattgtgctgtatcggttca 14296037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 18811628 - 18811516
Alignment:
Q  144 tctgtacaatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgacttt 242  Q
    ||||||| ||| ||||||||||||||| ||||| |||| | | ||||| |||||||||||||||| ||| |||||| ||| |||||||| || | ||| |    
T  18811628 tctgtactatggtggtctttgacacct-tttccataggtcttctcctttcttgggatagatccgaatttacttttcataggttttacatattgtaactct 18811530  T
Q  243 gttgtattggttca 256  Q
    ||||||||||||||    
T  18811529 gttgtattggttca 18811516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 30180028 - 30180136
Alignment:
Q  149 acaatgatggtctttgacacctctttccttaggacatttccttcttggg-atagatccgatttttcttttcgtagattttacattttatgactttgttgt 247  Q
    |||||| || ||||||||||||||||||||||||| ||||||| ||  | | |||| | |||||||||||| ||||||||||| ||| ||||| || |||    
T  30180028 acaatggtgatctttgacacctctttccttaggacctttccttttttagtacagattcaatttttcttttcatagattttacactttgtgactctggtgt 30180127  T
Q  248 attggttca 256  Q
    |||| ||||    
T  30180128 attgattca 30180136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 37344845 - 37344911
Alignment:
Q  190 ttcttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggttca 256  Q
    ||||||||||||||||||||| ||||||||||| ||||||| | | ||||| || ||||||||||||    
T  37344845 ttcttgggatagatccgatttctcttttcgtaggttttacactatgtgactctgatgtattggttca 37344911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 31092427 - 31092518
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttgg 114  Q
    |||||||||| || || ||| ||||||   |||||  ||||| |||||||||||||||||| |||||| |||||||| |||| |||||||||    
T  31092427 aatagttggtccatttgcattagaatatccgggaacgtcaatgcttttgttcaaattttcatagagagggtagtcttttagctgttgtttgg 31092518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 37344759 - 37344835
Alignment:
Q  52 tgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcat 128  Q
    |||||||| ||||| ||||||||||||||||  | |||| |||||||| |||  ||||||||||||| |||| ||||    
T  37344759 tgggaataccaatatttttgttcaaattttcttatagagagtagtcttctagtcgttgtttggccaagaatggtcat 37344835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 24239854 - 24239701
Alignment:
Q  21 ataatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaa 120  Q
    ||||||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||| ||| |  |||||||||||  |||||||||||||| |    
T  24239854 ataatagttggctcaattacaaaagaataacagggaatatcaatacttttgttcaaattttcatagaaatggtagtcttgtaatagttgtttggccaaga 24239755  T
Q  121 atgttcattatatgactaggttttctgtacaatgatggtctttgacacctcttt 174  Q
    ||  |||| |||||||||| ||||| ||| |||| |||||||||| ||||||||    
T  24239754 attgtcataatatgactagtttttcagtataatggtggtctttgatacctcttt 24239701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 18522308 - 18522103
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    ||||||||||||| || ||  |||||| | |||||||| |||||||||||||||||||||| ||||||| ||||||  ||||  |||||||||||| |||    
T  18522308 aatagttggttcagttgcagcagaatattcgggaatatgaatacttttgttcaaattttcatagagagtatagtctattagcttttgtttggccaagaat 18522209  T
Q  123 gttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttc-cttcttgggatagatccgatttttcttttcgta 221  Q
    | |||| || || |||| |||| ||| || || | |||||||| ||||||||||||||||| ||||  || |||||||||||||| ||||| |||| |||    
T  18522208 ggtcataatttgtctagtttttatgtccattggttgtctttgaaacctctttccttaggacctttcattttttgggatagatccggtttttgtttttgta 18522109  T
Q  222 gatttt 227  Q
    | ||||    
T  18522108 ggtttt 18522103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 37050112 - 37050345
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||||||||||||||| ||  ||||||  |||||||| ||||||||||||||||||||||| |||||| |||||||| |||  |||||||||||||  ||    
T  37050112 aatagttggttcaattgcaacagaatatatgggaataccaatacttttgttcaaattttcatagagagagtagtcttttagtcgttgtttggccaagtat 37050211  T
Q  123 gttcat-tatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatccgatttttcttttcgt 220  Q
    | ||||   | |||||| ||||| ||| || || | |||||||| ||||| |||||| ||||||| || || |||||||||||||  ||| ||||||| |    
T  37050212 ggtcatacttttgacta-gttttttgttcattggttgtctttgatacctcgttcctttggacattccctttattgggatagatccagtttctcttttcat 37050310  T
Q  221 agattttacattttatgactttgttgtattggttc 255  Q
    || ||||||| | | ||||| ||||||||||||||    
T  37050311 aggttttacactatgtgactctgttgtattggttc 37050345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 16832151 - 16831983
Alignment:
Q  21 ataatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtt-tggccaaa 119  Q
    |||||||| |||||| || ||| ||||||  | |||||||||||||||||  ||||||||||| ||||||  |||| ||||| || ||||| ||  |||     
T  16832151 ataatagtcggttcatttgcatcagaatagctaggaatatcaatacttttactcaaattttcatagagaggatagttttgtaacatttgttatgatcaag 16832052  T
Q  120 aatgttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttc 188  Q
    |||| |||| || ||||||| |||| ||||| | | |||||||||| || |||||| ||||||| ||||    
T  16832051 aatgatcataatctgactagcttttgtgtactacggtggtctttgaaacttctttctttaggacttttc 16831983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 10046649 - 10046558
Alignment:
Q  162 ttgacacctctttccttaggacatttccttcttgggatagatccgatttttcttttcgtaga-ttttacattttatgactttgttgtattggt 253  Q
    ||||||||| ||| ||||||||   |||||  |||||||||| || ||||||||||| || | |||||||||||||||| |||||||||||||    
T  10046649 ttgacaccttttttcttaggactcatcctttctgggatagattcggtttttcttttcataaatttttacattttatgac-ttgttgtattggt 10046558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 7500231 - 7500279
Alignment:
Q  66 cttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttgg 114  Q
    |||||||||||||||||| |||||| |||||||| ||||  ||||||||    
T  7500231 cttttgttcaaattttcatagagagggtagtcttttagctcttgtttgg 7500279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 230
Target Start/End: Original strand, 14344193 - 14344372
Alignment:
Q  52 tgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatatgactaggttttctgtaca 151  Q
    ||||||||||||||||||||||||| ||||   |||||| || ||||| |||  ||||||||||||| |||| || |  | ||| ||| |||||||| ||    
T  14344193 tgggaatatcaatacttttgttcaattttttttagagagagtggtcttttagtcgttgtttggccaagaatggtcgtattttgattagtttttctgttca 14344292  T
Q  152 atgatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatccgatttttcttttcgtagattttaca 230  Q
      | | |||||||||||||| ||||||| |||||| || || |||||||||||||||||||||||||| || ||||||||    
T  14344293 tgggttgtctttgacacctcgttccttatgacattcccttttttgggatagatccgatttttcttttcataaattttaca 14344372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 13061971 - 13061765
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||| ||||| ||||| || ||| |||  ||||||| | |||||||||||||||||||||| |||||| |||||||| |||| ||||||||||| | |||    
T  13061971 aataattggtccaattgcaaaagtatagatgggaatgttaatacttttgttcaaattttcatagagagggtagtcttttagctgttgtttggcctagaat 13061872  T
Q  123 gttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttc-cttcttgggatagatccgatttttcttttcgta 221  Q
    | || |  | |||||| ||||||||| ||||| | || ||||||||||||||| ||||| | ||||  |||||||||||||  || ||| ||||||| ||    
T  13061871 ggtcgtagtttgacta-gttttctgttcaatggttgtatttgacacctctttcattaggccttttcatttcttgggatagactcggtttctcttttcata 13061773  T
Q  222 gattttac 229  Q
    | ||||||    
T  13061772 ggttttac 13061765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 256
Target Start/End: Complemental strand, 44163741 - 44163536
Alignment:
Q  52 tgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatat-gactaggttttctgtac 150  Q
    |||||||| ||||||||||| ||| ||||||  |||||| ||||| || |||  ||||||||||||| |||| ||||  | | |||||| |||| ||| |    
T  44163741 tgggaataccaatacttttgatcatattttcttagagagagtagtttt-tagtcgttgtttggccaagaatggtcatactttagactagtttttatgttc 44163643  T
Q  151 aatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtat 249  Q
      |||  ||||||||||| || ||||| ||| |||| |||| ||||||||||||||| ||| ||||||| ||| ||||||| | | ||||| ||||||||    
T  44163642 tttgactgtctttgacacatcgttcctcagggcattacctttcttgggatagatccggtttctcttttcataggttttacactatgtgactctgttgtat 44163543  T
Q  250 tggttca 256  Q
    |||||||    
T  44163542 tggttca 44163536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 41034994 - 41034940
Alignment:
Q  57 atatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtt 111  Q
    ||||||| |||||||||||||||||||  ||||| ||||| ||||||||||||||    
T  41034994 atatcaacacttttgttcaaattttcatcgagagggtagttttgtagcagttgtt 41034940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 41034933 - 41034821
Alignment:
Q  144 tctgtacaatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgacttt 242  Q
    ||||||| ||| ||||||||||||||| ||||||| || | ||||||| |||| |||||||| | ||||||||||| ||| |||| ||  || ||||| |    
T  41034933 tctgtactatggtggtctttgacacct-tttccttgggtcttttcctttcttgtgatagatcgggtttttcttttcataggtttttcacattgtgactct 41034835  T
Q  243 gttgtattggttca 256  Q
    | ||||||||||||    
T  41034834 ggtgtattggttca 41034821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 35526570 - 35526403
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||| ||||| ||||| ||  ||||||  ||||||| | |||||||||||||||||||||| |||||||| | |||| ||||  ||||| ||||||| ||    
T  35526570 aataattggtgcaattgcaatagaatatctgggaatgttaatacttttgttcaaattttcatagagagtgcaatcttttagctattgttgggccaaacat 35526471  T
Q  123 gttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcctt 191  Q
    | |||| || |||||| ||||| ||||||||| | || |||||||||| |||| ||||| |||||||||    
T  35526470 ggtcataatttgacta-gttttatgtacaatggttgtttttgacacctgtttcattaggccatttcctt 35526403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 29346907 - 29347115
Alignment:
Q  21 ataatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaa 120  Q
    |||||||||||| ||||| ||  || |||  || |||| |||||||||||||| ||||||||| |||||| | |||||| |||  |||||||||||   |    
T  29346907 ataatagttggtccaattgcaagagtatagatgagaatgtcaatacttttgttaaaattttcatagagagggcagtcttttagttgttgtttggcctgga 29347006  T
Q  121 atgttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttc-cttcttgggatagatccgatttttcttttcg 219  Q
    ||| ||||  | |||||| ||||| ||| ||||| | || ||||||||||||||| ||||| | ||||  ||||||||||||| ||| ||| |||||||     
T  29347007 atggtcatagtttgacta-gttttatgttcaatggttgtatttgacacctctttcattaggccttttcttttcttgggatagacccggtttctcttttca 29347105  T
Q  220 tagattttac 229  Q
    ||| ||||||    
T  29347106 taggttttac 29347115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 49107005 - 49106841
Alignment:
Q  65 acttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatat-gactaggttttctgtacaatgatggtcttt 163  Q
    |||| ||| |||||||||| |||||| |||||||| |||  |||||| | |||| |||| ||||  | | |||||  |||| ||| || || | ||||||    
T  49107005 acttctgtgcaaattttcatagagagagtagtcttttagtcgttgttagaccaagaatggtcatacttttgactaatttttatgttcattggttgtcttt 49106906  T
Q  164 gacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagatttt 227  Q
    |||||||  || ||||||||||| |||| ||||||||||||||| ||| ||||||| ||| ||||    
T  49106905 gacaccttgtttcttaggacattccctttcttgggatagatccggtttctcttttcataggtttt 49106841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 18028457 - 18028366
Alignment:
Q  166 cacctctttccttaggacatttccttctt-gggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggttca 256  Q
    ||||||| |||||||||  |||||||  | ||||||||||  ||||||||||||| || || |||| ||| ||||| |||||||||||||||    
T  18028457 cacctctctccttaggatctttcctttatagggatagatctaatttttcttttcgcagcttatacactttttgactctgttgtattggttca 18028366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 34547991 - 34548225
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||||||||||||| | ||  ||||||  || ||||| |||||||||||| |||||||||| |||||| |||||||| |||  |||||| |||||| |||    
T  34547991 aatagttggttcaagtgcaacagaatatctgagaataccaatacttttgtgcaaattttcatagagagagtagtcttttagtcgttgttaggccaagaat 34548090  T
Q  123 gttcattatat-gactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgt 220  Q
    | ||||  | | |||||  |||| |||  | || |  ||||||||||||  |||||||||||||| |||| ||||||||||||||||||| ||||||| |    
T  34548091 ggtcatacttttgactaatttttatgtt-attggttatctttgacaccttgttccttaggacattccctttcttgggatagatccgatttctcttttcat 34548189  T
Q  221 agattttacattttatgactttgttgtattggttca 256  Q
    ||||||| || |   ||||| || ||||||||||||    
T  34548190 agatttttcactaagtgactctgatgtattggttca 34548225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 29132361 - 29132223
Alignment:
Q  120 aatgttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatccgatttttcttttc 218  Q
    |||| |||| || ||||||| |||| ||||||||| | |||||||||||||||||  |||| || ||||| |||||||||||||| || |||||||||||    
T  29132361 aatggtcataatttgactagtttttatgtacaatggtcgtctttgacacctctttttttagaacttttcctttcttgggatagattcggtttttcttttc 29132262  T
Q  219 gtagattttacattttatgactttgttgtattggttcat 257  Q
     ||  ||||||| ||  ||||| |  |||||||||||||    
T  29132261 ataagttttacacttcgtgactctactgtattggttcat 29132223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 16099789 - 16099906
Alignment:
Q  140 gttttctgtacaatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatga 238  Q
    ||||| |||||| || | ||||||| |||||| |||||||| || || |||| || |||||||||||| ||| ||||| | ||| ||||||||| |||||    
T  16099789 gttttttgtacattggttgtctttgtcacctcgttccttagaactttccctttctcgggatagatccggtttctctttccataggttttacattatatga 16099888  T
Q  239 ctttgttgtattggttca 256  Q
    || || ||||||||||||    
T  16099889 ctctgatgtattggttca 16099906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 7544081 - 7543909
Alignment:
Q  55 gaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaatgttcattatatgactaggttttctgtacaatg 154  Q
    |||| |||||||||||||||||||||||  | |||| | |||||| |||| ||||||||||| | |||| ||||  | |||||| ||||||||| || ||    
T  7544081 gaatgtcaatacttttgttcaaattttc--atagagggcagtcttttagctgttgtttggcctagaatggtcatagtttgacta-gttttctgttcagtg 7543985  T
Q  155 atggtctttgacacctctttccttaggacatttc-cttcttgggatagatccgatttttcttttcgtagattttac 229  Q
       || ||||||||||||| | ||||| | ||||  ||||||||||||| ||| ||| ||||||| ||| ||||||    
T  7543984 gctgtatttgacacctcttacattaggccctttcttttcttgggatagacccggtttctcttttcataggttttac 7543909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 26180318 - 26180407
Alignment:
Q  141 ttttctgtacaatgatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatccgatttttcttttcgtagattttac 229  Q
    ||||| ||| |||| |||||||||||| |||||| || ||||| ||||| || || ||||||||||  |||||||||||||| |||||||    
T  26180318 ttttccgtataatggtggtctttgacatctcttttctcaggacttttccttttttaggatagatccagtttttcttttcgtatattttac 26180407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 3949445 - 3949680
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||||||| ||||||| ||  ||||||  || ||||| ||||||||||||||||||||||  |||| | ||||||||  ||  ||| ||||||||| |||    
T  3949445 aatagttgattcaattgcaacagaatatctgagaataccaatacttttgttcaaattttcttagagggagtagtctttcagtcgttatttggccaagaat 3949544  T
Q  123 gttcattatat-gactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgt 220  Q
    | ||||  | | |||||| ||||||||  | |  | |||||||||||||| ||||||||| |||| |||| ||| ||||||||||| ||| ||||||| |    
T  3949545 ggtcatacttttgactagcttttctgtttattagttgtctttgacacctcgttccttaggtcattccctttcttaggatagatccggtttctcttttcat 3949644  T
Q  221 agattttacattttatgactttgttgtattggttca 256  Q
    || ||||||| | | || || |||||||||||||||    
T  3949645 aggttttacactatgtgtctctgttgtattggttca 3949680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 25167954 - 25168188
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttggccaaaaat 122  Q
    |||||||||||||||| ||  ||||||  |||||||| ||||||||||||||||||||||| ||| || |||||||| |||  |||||||||||||  ||    
T  25167954 aatagttggttcaattgcaacagaatatatgggaataccaatacttttgttcaaattttcatagaaagagtagtcttttagtcgttgtttggccaagtat 25168053  T
Q  123 gttcat-tatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatccgatttttcttttcgt 220  Q
    | ||||   | |||||| ||||| ||| || || | | |||||||||||| |||||| | ||||| || || |||||||||||    ||| ||||||| |    
T  25168054 ggtcatacttttgacta-gttttttgttcattggttgcctttgacacctcgttcctttgaacattccctttattgggatagatttagtttctcttttcat 25168152  T
Q  221 agattttacattttatgactttgttgtattggttca 256  Q
    || ||||||| | | ||||| |||||||||||||||    
T  25168153 aggttttacactatgtgactctgttgtattggttca 25168188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 5605559 - 5605449
Alignment:
Q  143 ttctgtacaatgatggtctttgacacctctttccttaggacatttcc-ttcttgggatagatccgatttttcttttcgtagattttacattttatgactt 241  Q
    |||||||||||  |||||||||||||||||||| ||||| | ||||| ||||| ||||| | |||| |||||||||| ||| |||||||  || |||||     
T  5605559 ttctgtacaatagtggtctttgacacctctttctttagggcctttcctttctttggatatacccgacttttcttttcataggttttacacattgtgactc 5605460  T
Q  242 tgttgtattgg 252  Q
    |||||||||||    
T  5605459 tgttgtattgg 5605449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 2606744 - 2606645
Alignment:
Q  158 gtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgactttgttgtattggttca 256  Q
    |||||||||||||  |||||||||| ||| |||| ||| ||||||||||  ||| ||||||| ||| |||| || ||| ||||| || ||||||||||||    
T  2606744 gtctttgacaccttgttccttaggatattccctttcttaggatagatccagtttctcttttcataggtttttcactttgtgactctgatgtattggttca 2606645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 10990217 - 10990333
Alignment:
Q  141 ttttctgtacaatgatggtctttgacacctctttcctt-aggacatttccttcttgggatagatccgatttttcttttcgtagattttacattttatgac 239  Q
    |||||||||  ||| ||||||||||||||||||| ||| | ||| || | |||| |||||| | ||||||||||||||| ||| || | ||  || ||||    
T  10990217 ttttctgtatcatggtggtctttgacacctcttttcttaaagactttcctttctagggatatacccgatttttcttttcataggttgttcacattgtgac 10990316  T
Q  240 tttgttgtattggttca 256  Q
    | || ||||||||||||    
T  10990317 tctgctgtattggttca 10990333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 27786701 - 27786589
Alignment:
Q  144 tctgtacaatgatggtctttgacacctctttccttaggacatttcctt-cttgggatagatccgatttttcttttcgtagattttacattttatgacttt 242  Q
    ||||||| ||| |||| | |||||||| |||||||||| | ||||||| |||||||||||||||| |||||||||| ||| | |||||  || |||||||    
T  27786701 tctgtactatggtggtgtgtgacacct-tttccttaggtcttttcctttcttgggatagatccgacttttcttttcataggtcttacacattgtgacttt 27786603  T
Q  243 gttgtattggttca 256  Q
    ||||||||||||||    
T  27786602 gttgtattggttca 27786589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 28225691 - 28225556
Alignment:
Q  54 ggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtt-tggccaaaaatgttcattatatgactaggttttctgtacaa 152  Q
    |||||||||||| ||| || |||| ||||| |||||| |||||||||||||| ||||| | ||||| |||| |||| || || |||| |||||||||| |    
T  28225691 ggaatatcaataatttagtacaaactttcatagagagggtagtcttgtagcaattgttattgccaagaatggtcataatctgcctagcttttctgtacca 28225592  T
Q  153 tgatggtctttgacacctctttccttaggacatttc 188  Q
    || | |  || | |||||||||||||||||| ||||    
T  28225591 tggtagaattagtcacctctttccttaggacctttc 28225556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 29369214 - 29369305
Alignment:
Q  23 aatagttggttcaattacataagaataattgggaatatcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtttgg 114  Q
    |||||||||| ||||| ||| ||||||   | |||| ||||| |||||||||||||||||| |||||| |||||||| ||||  ||||||||    
T  29369214 aatagttggtccaattgcattagaatatccgagaatgtcaatgcttttgttcaaattttcatagagagggtagtcttttagctattgtttgg 29369305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 3801149 - 3801281
Alignment:
Q  96 tcttgtagcagttgtttggccaaaaatgttcattatatgactaggttttctgtacaatgatggtctttgacacctctttccttaggacatttcc-ttctt 194  Q
    |||| |||| ||||||||||||| |||| |||| || |||| || |||| ||||  | | | |||||||||||||||||||||||| | || || |||||    
T  3801149 tcttttagctgttgtttggccaagaatggtcataatttgaccag-ttttatgtaatacggttgtctttgacacctctttccttaggtccttgcctttctt 3801247  T
Q  195 gggatagatccgatttttcttttcgtagatttta 228  Q
     ||||||||||| ||| ||||||| ||| |||||    
T  3801248 aggatagatccggtttctcttttcataggtttta 3801281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 13885936 - 13885884
Alignment:
Q  59 atcaatacttttgttcaaattttcaaagagagtgtagtcttgtagcagttgtt 111  Q
    ||||| ||||||||||||||| ||| ||||||| |||| ||||| ||||||||    
T  13885936 atcaacacttttgttcaaattgtcatagagagtatagttttgtaacagttgtt 13885884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University