View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_59 (Length: 251)
Name: NF3546_low_59
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 27404076 - 27404310
Alignment:
| Q |
1 |
tgatgtaaaactaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaatttaaaatcagaaaagacgcttccgatgctatagaagaacat |
100 |
Q |
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| T |
27404076 |
tgatgtaaaactaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaatttgaaatcgcagaagatgcttctgatactatagaagaacat |
27404175 |
T |
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| Q |
101 |
atcgatgatcaagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggttgttgaactttaaacactgttcacttcaattg |
200 |
Q |
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| T |
27404176 |
atcgatgatcaagggatttcccttgcgcctttaaacatggaagacatgagacatgcaaagaataaggttgttgaactttaaacactgttcacttcaattg |
27404275 |
T |
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| Q |
201 |
atttagtgttatggcttgtttattacgggcataag |
235 |
Q |
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| T |
27404276 |
atttagtgttatgacttgtttattacgggcataag |
27404310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 44936319 - 44936476
Alignment:
| Q |
11 |
ctaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaatttaaaatcagaaaagacgcttccgatgctatagaagaacatatcgatgatc |
110 |
Q |
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| T |
44936319 |
ctaagtaattaccatttattttagacaaagaagaaaaaggtgacagaagttgaaatcttagaagaagcttccattgctaccgaagaagataaagaagatc |
44936418 |
T |
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| Q |
111 |
aagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggt |
168 |
Q |
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| T |
44936419 |
aagtgattgccctcaggcctttaaacatggaggacatgagagaggcaaagaataaggt |
44936476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 45989794 - 45989855
Alignment:
| Q |
107 |
gatcaagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggt |
168 |
Q |
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| T |
45989794 |
gatcaagtgatttccctccggcctttgaacatggaagacatgagacaggcaaagaataaggt |
45989855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 44927911 - 44927948
Alignment:
| Q |
21 |
accacttatttcaggaaaagaagaaagaggaggcagaa |
58 |
Q |
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| T |
44927911 |
accacttatttcagaaaaagaagaaaaaggaggcagaa |
44927948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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