View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_6 (Length: 558)
Name: NF3546_low_6
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 39732317 - 39732809
Alignment:
| Q |
11 |
cataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatgtgggcttattttggtatatggttca |
110 |
Q |
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| T |
39732317 |
cataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatgtgggcttattttggtatatggttca |
39732416 |
T |
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| Q |
111 |
tgaacttcaaaatcatattcacaaactcaagacatatacaccaatcatgttcatgtacttctttagccattctacattgctggactaagcatctgcggga |
210 |
Q |
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| T |
39732417 |
tgaacttcaaaatcatattcacaaactcatgacatatacaccaatcatgttcatgtacttctttagccattctacattgctggactaaacatctgcggga |
39732516 |
T |
|
| Q |
211 |
ctactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcatttatttttatcaacattagtaggtc |
310 |
Q |
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| T |
39732517 |
ctactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcatttatttttatgaacattagtaggtc |
39732616 |
T |
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| Q |
311 |
ctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaattgaaagattttcttggagaaatga |
410 |
Q |
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| T |
39732617 |
ctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaattgaaagattttcttggaggaacga |
39732716 |
T |
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| Q |
411 |
gataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccccgaatctattcatgatgtttatctttctatttcagttgac |
503 |
Q |
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| T |
39732717 |
gataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccccgaatctattcatgatgtttatctttctatttcagttgac |
39732809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 268 - 459
Target Start/End: Complemental strand, 37477029 - 37476844
Alignment:
| Q |
268 |
cttaattgctcttttcatttatttttatcaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccat |
367 |
Q |
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| T |
37477029 |
cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgg------agcctgtcgaggatccttcaccat |
37476936 |
T |
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| Q |
368 |
ttaaattcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
459 |
Q |
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| T |
37476935 |
caagattcacatggagaattgacaacttttctagggtgaatttgaaaaagctctattcagatgtatttgttgttgggagttacaaatggtat |
37476844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 39868313 - 39868226
Alignment:
| Q |
372 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
459 |
Q |
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| T |
39868313 |
attcacatggagaattgggggattttcttcgataaatacaataaagctctattcagatgtatttgaagttgggggttacaaatggtat |
39868226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 39732840 - 39732884
Alignment:
| Q |
499 |
ttgacccatgtagattctatctattggaggaagtgattttgttgt |
543 |
Q |
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| T |
39732840 |
ttgagccatgtagattctatctattggaggaactgattttgttgt |
39732884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 39901787 - 39901700
Alignment:
| Q |
372 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
459 |
Q |
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| T |
39901787 |
attcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtat |
39901700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 39913702 - 39913661
Alignment:
| Q |
418 |
ctctgttcagatgtatttgatgttgggggctataaatggtat |
459 |
Q |
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| T |
39913702 |
ctctattcagatgtatttgaagctgggggctataaatggtat |
39913661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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