View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_67 (Length: 246)
Name: NF3546_low_67
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5174542 - 5174317
Alignment:
| Q |
1 |
ttttgatgtatttacatatacatgtgtaaactgtaaagattcttttgtcttttccaacccttccaaactaattaaaaaggcctatataggaagagaaagg |
100 |
Q |
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| T |
5174542 |
ttttgatgtatttacatatacatgtgtaaactgtaaagattcttttgtcttttccaacccttccaaactaa----aaaggcctgtataggaagagaaagg |
5174447 |
T |
|
| Q |
101 |
ggttgaaaatgacaagtatcaaatatgacaaaaactacaactgttactaatacc-tacttagttgttttatggttacatttaaacataaattatcctagg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5174446 |
ggttgaaaatgacaagtatcaaatatgacaaaaactacaactgttactaataccttacttagttgttttatggttacattaaaacataaattatcctagg |
5174347 |
T |
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| Q |
200 |
atctatatcatcgttcttaaaggtggtaac |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5174346 |
atctatatcatcgttcttaaaggtggtaac |
5174317 |
T |
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