View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_71 (Length: 241)
Name: NF3546_low_71
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_71 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 1033774 - 1034006
Alignment:
| Q |
9 |
gttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1033774 |
gttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcaataagtaca |
1033873 |
T |
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| Q |
109 |
atattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033874 |
atattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatgg |
1033973 |
T |
|
| Q |
209 |
tactttcatggttgcgggaggttatgacagaca |
241 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1033974 |
tactttcatggttgcgggaggttatgacagaca |
1034006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 1044161 - 1044393
Alignment:
| Q |
9 |
gttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtaca |
108 |
Q |
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|||||||||||| ||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |
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| T |
1044161 |
gttggaattagactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtaca |
1044260 |
T |
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| Q |
109 |
atattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatgg |
208 |
Q |
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| T |
1044261 |
atattctttactgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatgg |
1044360 |
T |
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| Q |
209 |
tactttcatggttgcgggaggttatgacagaca |
241 |
Q |
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||||||||| ||| ||||| ||||||||||| |
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| T |
1044361 |
ctctttcatggctgcaggaggctatgacagaca |
1044393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 1071503 - 1071735
Alignment:
| Q |
9 |
gttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtaca |
108 |
Q |
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|||||||| ||||||||||||||||| || ||||||||| | |||||||||| || | |||||||||||||||||||||||||||||||| ||| ||| |
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| T |
1071503 |
gttggaataagattatcaccttttgcagagtattcagaatgtggagactccaaccctaaagaattgggactttatatggttaatgccctcaataaatacg |
1071602 |
T |
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| Q |
109 |
atattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatgg |
208 |
Q |
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||||||||| ||||||||||||||||||||||| | | | || ||||| | |||| |||| |||| || ||||| ||||||||||| ||||| || |
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| T |
1071603 |
gtattctttattgtcacatggtggaaccaagaatgataactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaagg |
1071702 |
T |
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| Q |
209 |
tactttcatggttgcgggaggttatgacagaca |
241 |
Q |
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| T |
1071703 |
cactttcatggttgcaggaggttacgaccgaca |
1071735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 1065776 - 1066008
Alignment:
| Q |
9 |
gttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtaca |
108 |
Q |
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|||||||| |||||||||||||||||||| || |||||| | |||||||||| |||| |||||||||||||||||||| |||||||||| ||| || |
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| T |
1065776 |
gttggaataagattatcaccttttgcggagtatgcagaatgtggagactccaaccccaatgaattgggactttatatggtcaatgccctcaataaatatg |
1065875 |
T |
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| Q |
109 |
atattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatgg |
208 |
Q |
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||||||||||||||| ||||||||||||||||| ||| | || ||||| | |||| |||| |||| || ||||| ||||||||||| ||||| || |
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| T |
1065876 |
gtattctttactgtcatatggtggaaccaagaatgaaaactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaagg |
1065975 |
T |
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| Q |
209 |
tactttcatggttgcgggaggttatgacagaca |
241 |
Q |
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|||||||||||||| |||||||| ||| |||| |
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| T |
1065976 |
cactttcatggttgcaggaggttacgaccgaca |
1066008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 1640782 - 1640649
Alignment:
| Q |
9 |
gttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtaca |
108 |
Q |
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||||||||||||||||| ||||| || ||| || ||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
1640782 |
gttggaattagattatcgcctttcgcagaatatggagaatgtggagactccaatcctgaagaattggggctttatatggttaatgccctcagtaaataca |
1640683 |
T |
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| Q |
109 |
atattctttactgtcacatggtggaaccaagaat |
142 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1640682 |
atattctttactgtcacatggtggaaccaagaat |
1640649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 1058686 - 1058907
Alignment:
| Q |
11 |
tggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtacaat |
110 |
Q |
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| T |
1058686 |
tggaattagattatcacctttttcagaatatgcagaatgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggt |
1058785 |
T |
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| Q |
111 |
attctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggta |
210 |
Q |
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|||||||||||||| |||||||||||||||| ||| | | |||||| |||||| || || |||| || ||||| ||||||||||| ||||| || | |
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| T |
1058786 |
attctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggca |
1058885 |
T |
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| Q |
211 |
ctttcatggttgcgggaggtta |
232 |
Q |
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||||| ||| ||| |||||||| |
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| T |
1058886 |
ctttcctggctgcaggaggtta |
1058907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 1053462 - 1053552
Alignment:
| Q |
52 |
gagactccaatcccacagaattgggactttatatggttaatgccctcagtaagtacaatattctttactgtcacatggtggaaccaagaat |
142 |
Q |
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| T |
1053462 |
gagactcaaatccccaagaattgggactttatatggtgaatgccctcaataaatatggtattctttattgtcatatggtggaaccaagaat |
1053552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 1046919 - 1046959
Alignment:
| Q |
181 |
tggtgcccatgagaaaggctttcaatggtactttcatggtt |
221 |
Q |
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| T |
1046919 |
tggtgccagtgagaaaggctttcaatggcactttcatggtt |
1046959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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