View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_79 (Length: 215)
Name: NF3546_low_79
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 52165179 - 52165374
Alignment:
| Q |
1 |
cactctccatcaccggatctcgccatcgacaacatcaaagacatcgcccgccgtcaccctgccaccgtcaacaacttcactgccaaatacgtcccattca |
100 |
Q |
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| T |
52165179 |
cactctccatcaccggatctcgccaccgacaacatcaaagacatcgcccgccgtcaccctgccacctccaacaacttcactgccaaatacgtcccattca |
52165278 |
T |
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| Q |
101 |
actccaccttcgactcccctgaatcctactccctcgatgaaatcgtttatcgcagcaactccggcggcctccttgacgtccaccatgacatcgaag |
196 |
Q |
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| T |
52165279 |
actccaccttcgactcccctgaatcctactccctcgatgaaatcgtttatcgcagcaactccggcggcctccttgacgtccaccatgacatcgaag |
52165374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 19437835 - 19437775
Alignment:
| Q |
27 |
cgacaacatcaaagacatcgcccgccgtcaccctgccaccgtcaacaacttcactgccaaa |
87 |
Q |
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| T |
19437835 |
cgacaacatcaaagacaatgctcgccgtcaccctttcaccaccaacaacttcactgccaaa |
19437775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 19573984 - 19573924
Alignment:
| Q |
27 |
cgacaacatcaaagacatcgcccgccgtcaccctgccaccgtcaacaacttcactgccaaa |
87 |
Q |
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||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||| |
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| T |
19573984 |
cgacaacatcaaagacaatgctcgccgtcaccctttcaccaccaacaacttcactgccaaa |
19573924 |
T |
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