View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_8 (Length: 552)
Name: NF3546_low_8
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 31069376 - 31069112
Alignment:
| Q |
20 |
atgttcatagcccaccatagattggtatggaggatcttaaagtgagttcccttatagaccataacataggagtgtcgtgatggacttgattcggaat--- |
116 |
Q |
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| T |
31069376 |
atgttcatagcccgccatagattggtatggaggatcttaaactgagttcccttatagaccataacagaggagtgttgtgatggacttgattcggaatata |
31069277 |
T |
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| Q |
117 |
-gtgatgaacagcatgacatata--gagtgaaaaagaatacctattatgcatattaataatgaagatgcactagtgtagaaattcagcaacgatgaaata |
213 |
Q |
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| T |
31069276 |
tgtgatgaacaacatgacatatatagagtgaaaaagaacacctattatgcatattaataatgaagatgcactggtgtagaaattgagcaaggatgaaata |
31069177 |
T |
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| Q |
214 |
tatacatgtcggtcggcctatagattcactatggagttcctcatagattcatcacacctgcggat |
278 |
Q |
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| T |
31069176 |
tatacagttcggtcggcctatagattcactatggagttcctcattgattcatctcacctgcggat |
31069112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 31042449 - 31042242
Alignment:
| Q |
20 |
atgttcatagcccaccatagattggtatggaggatcttaaagtgagttcccttatagaccataacataggagtgtcgt-gatggacttgat-------tc |
111 |
Q |
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| T |
31042449 |
atgttcatagcccaccatagattggtatggaggatcttaaagtgagtgcccttatagatcataacagaggagtgtcttggatggacttgattcggaaatc |
31042350 |
T |
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| Q |
112 |
ggaatgtgatgaa-cagcatgacatatagagtg-aaaaagaatacctattatgcatattaataatgaagatgcactagtgtagaaattcagcaacgatga |
209 |
Q |
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| T |
31042349 |
ggaatgtgatgaaccagcatgacatatatagtgtgacaagaatgcctatcatgcaaattaataatgaagatgcactggtgtagaaattcagcaaggatgg |
31042250 |
T |
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| Q |
210 |
aatatata |
217 |
Q |
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| T |
31042249 |
aaaatata |
31042242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 277 - 441
Target Start/End: Complemental strand, 31069083 - 31068910
Alignment:
| Q |
277 |
atgtaaattgcacagaaggttaaagtattcatgtggcagataacgaggggatgcatcccaacacgggaaaaattggttcagagagaagtcatttgcacat |
376 |
Q |
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| T |
31069083 |
atgtaaatttcacacaaggttaaagtattcctgtggcggataacaagggggtgcatcccaacacgggaaaaattggttcagagagaagtcatttgcacat |
31068984 |
T |
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| Q |
377 |
caagttgtccgtactgcga---------tgaggatgactggcattgctttcacggatgcacaagggcacatgca |
441 |
Q |
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| T |
31068983 |
caagttgttcgtactgcgatgttttgattgaggatggctgacattgctttctcggatgcacaagggcacgtgca |
31068910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 31055380 - 31055283
Alignment:
| Q |
177 |
agatgcactagtgtagaaattcagcaacgatgaaatatatacatgtcggtcggcctatagattcactatggagttcctcatagattcatcacacctgc |
274 |
Q |
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| T |
31055380 |
agatggactggtgtagaaatccagcaaggatagaaaatatacagctcggtcggcctatagattcactatggagtccctcatagattcatcacacctgc |
31055283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 31097775 - 31097723
Alignment:
| Q |
478 |
ttaaggcaatgttttctcttgctcaccacaacctccaatgcaattcagctcct |
530 |
Q |
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| T |
31097775 |
ttaatgcaatgttttttcttgctcaccacaacctccaacacaattcagctcct |
31097723 |
T |
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