View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_80 (Length: 213)
Name: NF3546_low_80
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 38300060 - 38299878
Alignment:
| Q |
19 |
tttacctataaaaaatcatagagtaactcatagtaagaaaactaaggcagataatttacacaccttatccattagaggaactcttccatatggatttgat |
118 |
Q |
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| T |
38300060 |
tttacctataaaaaatcatagagtaactcata---agaaaactaaggcaaataatttacacaccttatccattagaggaactcttccatatggatttgat |
38299964 |
T |
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| Q |
119 |
ctttcaaaatattgacaatagagatgacccaatctatcattcaaatgccagagacaatcttgttcatatcctccttcttctgatga |
204 |
Q |
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| T |
38299963 |
ctttcaaaatattgacaatagagatgacccaatctatcattcaaatgccagagacaatcttgttcatatcctccttcttctgatga |
38299878 |
T |
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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 14860369 - 14860501
Alignment:
| Q |
79 |
caccttatccattagaggaactcttccatatggatttgatctttcaaaatattgacaatagagatgacccaatctatcattcaaatgccagagacaatct |
178 |
Q |
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||||||||| |||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
14860369 |
caccttatcaattagaggaactcttccatatggagttgatttttcaaaatactggaaatagagatgacccaatcgatcattcatatgccagagactatct |
14860468 |
T |
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| Q |
179 |
tgttcatatcctccttcttctgatgatgtccat |
211 |
Q |
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| T |
14860469 |
tgctcagatgctccttcttctgatgatgtccat |
14860501 |
T |
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