View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_9 (Length: 543)
Name: NF3546_low_9
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 5 - 530
Target Start/End: Original strand, 30256407 - 30256917
Alignment:
| Q |
5 |
ctctttagctggaagtggtgagcatctttttgtgttaaattaactttggaatgaatgnnnnnnnn-ctgtaataattttatgcacacttttctgagttgt |
103 |
Q |
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| T |
30256407 |
ctctttagctggaagtggtgagcatctttttgtgttaaattaactttggaatgaatgaaaaaaaaactgtaataattttatgcacacttttctgagttgt |
30256506 |
T |
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| Q |
104 |
tctgtagtagctagtaaggattttgaagagcagaaagcattcaactatgatgaagagaaagggaaaggaaagcaagaaaagagaagtcttatgagcaatg |
203 |
Q |
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| T |
30256507 |
tctgtagtagctagtaaggattttgaagagcagaaagcattcaactatgatgaagagaaagggaaaggaaagcaagaaaagagaagtcttatgagcaatg |
30256606 |
T |
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| Q |
204 |
acatagaagaagatgactacctgtaacttttcttctctcaaatactctatcaacgattcaacgctatgaaactatttacattagaaatttagaatgcatt |
303 |
Q |
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| T |
30256607 |
acatagaagaagatgactacctgtaacttttcttctctcaaatactctatcaacg--------ctatgaaactatgtacattag--------aatgcatt |
30256690 |
T |
|
| Q |
304 |
ttcttcttctcaactcttacttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcaaccattatggcgcaaagtaccaat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30256691 |
ttcttcttctcaactcttacttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcagccattatggcgcaaagtaccaat |
30256790 |
T |
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| Q |
404 |
agcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaactccggtgcacgac |
503 |
Q |
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| T |
30256791 |
agcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaactccggtgcacgac |
30256890 |
T |
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| Q |
504 |
gcatttgccttatggataatctctgtg |
530 |
Q |
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| T |
30256891 |
gcatttgccttatggataatctctgtg |
30256917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 474
Target Start/End: Original strand, 15170478 - 15170588
Alignment:
| Q |
364 |
tggctgagtcaaggcaaccattatggcgcaaagtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagt |
463 |
Q |
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||||||| |||| |||||||||||||||||||| |||||| | || ||| | || |||||||| || ||||| ||| ||||| | ||||| |||||| |
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| T |
15170478 |
tggctgaagcaagacaaccattatggcgcaaagttccaataccatcaagcttgataaatccataccgaatagtaattatcatgagacttgtaatcctagc |
15170577 |
T |
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| Q |
464 |
tttcttcttcc |
474 |
Q |
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| T |
15170578 |
attcttcttcc |
15170588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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