View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_10 (Length: 509)
Name: NF3547_high_10
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 35907776 - 35907282
Alignment:
| Q |
1 |
cacatgtgccacagttcatatcaatcacacatgaatttttatcggtctcagacaccccttttggtgcttttatcgataacttgcacagccctgattcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35907776 |
cacatgtgccacagttcatatcaatcacacatgaatttttatcggtctcagacaccccttttggtgcttttatcgataacttgcgcagccctgattcatt |
35907677 |
T |
|
| Q |
101 |
agttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctctagtgtttcccgatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907676 |
agttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctctagtgtttcccgatta |
35907577 |
T |
|
| Q |
201 |
agcgaattataactagtcccttgatcaacactatgcaattcattgtcgattttttcaggatcaccaccaatgttctgactcctaacttctaaagctttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907576 |
agcgaattataactagtcccttgatcaacactatgcaattcattgtcaattttttcaggatcaccaccaatgttctgactcctaacttctaaagctttct |
35907477 |
T |
|
| Q |
301 |
cctctaacttctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcaccgcatacactaaccctgacacccaaactatgtccagctcc |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907476 |
cctctaactcctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcaccgcatacactaaccctgacacccaaactatgtccagctcc |
35907377 |
T |
|
| Q |
401 |
tgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcaccactacctttacttgttc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35907376 |
tgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcaccactacctttacttgttc |
35907282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 259 - 438
Target Start/End: Complemental strand, 35915154 - 35914977
Alignment:
| Q |
259 |
gatcaccaccaatgttctgactcctaacttctaaagctttctcctctaacttctcattcaatacaagatcattgcacgtctcttctgaattccgatcttc |
358 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
35915154 |
gatcaccaccaatgttctgacccctcacttctaagtgtttctcctttaactcctcattcaatacaagatcattgcagttctcttctgaattccggtcttg |
35915055 |
T |
|
| Q |
359 |
accgcatacactaaccctgacacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaat |
438 |
Q |
| |
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| ||||||||||||| | ||||| |||| |||||||||||||||||||||||| ||||||||||||| | |||||| |
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|
| T |
35915054 |
aa-gcatacactaaccttataacccag-ctatatccagctcctgcatcagttgcaactccttcaaccaaatgactcaaat |
35914977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 35915338 - 35915257
Alignment:
| Q |
50 |
agacaccccttttggtgcttttatcgataacttgcacagccctgattcattagttttagcttccaattttctattatctcca |
131 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35915338 |
agacaccccttttggttctttaatcaataacttgtgcagtcctggttcattagttttagcttccaattttctattatctcca |
35915257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 33911169 - 33910675
Alignment:
| Q |
1 |
cacatgtgccacagttcatatcaatcacacatgaatttttatcggtctcagacaccccttttggtgcttttatcgataacttgcacagccctgattcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
33911169 |
cacatgtgccacagttcatatcaatcacacatgaatttttatcggtctcagacaccccttttggtgcttttattgataacttgcgcagccctgattcatt |
33911070 |
T |
|
| Q |
101 |
agttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctctagtgtttcccgatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
33911069 |
agttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaatacaggtctctagtgtttcccgatta |
33910970 |
T |
|
| Q |
201 |
agcgaattataactagtcccttgatcaacactatgcaattcattgtcgattttttcaggatcaccaccaatgttctgactcctaacttctaaagctttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33910969 |
agcgaattataactagtcccttgatcaacactatgcaattcattgtcgattttttcaggatcaccaccaatgttctgactcctaacttctaaagctttct |
33910870 |
T |
|
| Q |
301 |
cctctaacttctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcaccgcatacactaaccctgacacccaaactatgtccagctcc |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33910869 |
cctctaactcctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcactgcatatactaaccctgacacccaaactatgtccagctcc |
33910770 |
T |
|
| Q |
401 |
tgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcaccactacctttacttgttc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33910769 |
tgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcaccactacctttacttgttc |
33910675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 342 - 487
Target Start/End: Complemental strand, 41140658 - 41140512
Alignment:
| Q |
342 |
tctgaattccgatcttcaccgcatacactaaccctgacacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaatt-c |
440 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| || || |||| ||||||||| ||||||||||||||||||| ||||||| || || ||||||| | |
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|
| T |
41140658 |
tctgaattttgatcttcactgcatacactaaccttgtcatccaagctatgtccatctcctgcatcagttgcaactccttcaagtaagttgctcaaattcc |
41140559 |
T |
|
| Q |
441 |
ttatcaacccctttatcaacatgatccaacatttcaccactaccttt |
487 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
41140558 |
ccataaacccctttatcaacatgagccaacatttcaccgctaccttt |
41140512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 41140812 - 41140700
Alignment:
| Q |
91 |
ctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctctagtgt |
190 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
41140812 |
ctgattcattagttttagcttccaatcttctattatctccattgac----acac--tcatcttgagcagaagaatctattacaacacaggtctcaagttc |
41140719 |
T |
|
| Q |
191 |
ttcccgattaagcgaatta |
209 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
41140718 |
ttccttattaaacgaatta |
41140700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 5073025 - 5072979
Alignment:
| Q |
15 |
ttcatatcaatcacacatgaatttttatcggtctcagacaccccttt |
61 |
Q |
| |
|
|||||||||||||||||| ||| |||||| || |||||||||||||| |
|
|
| T |
5073025 |
ttcatatcaatcacacataaatctttatcagtttcagacaccccttt |
5072979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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