View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_14 (Length: 488)
Name: NF3547_high_14
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 13145240 - 13144798
Alignment:
| Q |
16 |
atggttgtcttgttttgatcttgtaatcatgactcatataataaaattgaatattatttctgccttataataattgtcacatttgatcatttaacactta |
115 |
Q |
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| T |
13145240 |
atggttgtcttgttttgatcttgtaatcacgactcatataataaaattgaatattatttctgccttataataattgtcacatttgatcatttaacactaa |
13145141 |
T |
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| Q |
116 |
agaaaatatgnnnnnnn-atcaagaaaatatgatagtatatataaaaatatgataattgtaatttgacgggctttccaccaaaagannnnnnnnattaaa |
214 |
Q |
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| T |
13145140 |
agaaaatatgttttttttatcaagaaaatatgatagtatatataaaaatatgataattgtaattttac-----------caaaagattttttttattaaa |
13145052 |
T |
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| Q |
215 |
catattattggtttcagttataatttattttttaaagcatcttcggttgtaaattgtaatgcaaatacattatgagaattggcaccctcaaaataaaagc |
314 |
Q |
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| T |
13145051 |
catattattggtttcagttataatttattttttaaagcagcttcggttgtaaattgtaatgcaaatacattatgagaattggcaccctcaaaataaaagc |
13144952 |
T |
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| Q |
315 |
atatatatagcaatgagaaaaatattcaaagtgaatagaaagtcaaggttccactatgttcgccgccgctggatcatttccatatcccttttacagagaa |
414 |
Q |
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| T |
13144951 |
atata----gcaatgagaaaaatattcaaagtgaatagaaagtcaaggttccactatggccgccgctgctggatcatttccatatcccttttacagagaa |
13144856 |
T |
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| Q |
415 |
aaatgtacacgaatgacatgtcaatgtttacaaaaatcaaccactatgtgtgtaattt |
472 |
Q |
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| T |
13144855 |
aagtgtacacgaatgacacgtcgatgtttacaaaaatcaaccactatgtgtgtaattt |
13144798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 13151962 - 13151920
Alignment:
| Q |
16 |
atggttgtcttgttttgatcttgtaatcatgactcatataata |
58 |
Q |
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| T |
13151962 |
atggttgtcttgttttgatcttgtaaccacaactcatataata |
13151920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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