View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_16 (Length: 472)
Name: NF3547_high_16
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 43988882 - 43988430
Alignment:
| Q |
1 |
cctatcctcccaacttacatctaaaaataacatataaattaacaaaactatactcatcaaagatgcacaaaatcttaacattttaaattcgactacaata |
100 |
Q |
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| T |
43988882 |
cctatcctcacaacttacatctaaaaataacaaataaattaacaaaactatactcatcaaagatgcacaaaatcttaacattttaaattcgactacaata |
43988783 |
T |
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| Q |
101 |
ccctataaatttgaacatattctttgtcgtcaaatgtacacactgtttaggttatttaggtttctagttgtttcaaaagaggggagcaaacggtgaagaa |
200 |
Q |
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| T |
43988782 |
ccctataaatttgaacatattctttgtcatcaaatgtacacactgtttaggttatttaggtttctagttgtttcaaaagaggggagcaaacggtgaagaa |
43988683 |
T |
|
| Q |
201 |
cattgaaatgagtggcggaggagattggagaagaagattgagatattatagaaaagagagatgagctttccttgnnnnnnntataattattggatactta |
300 |
Q |
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| T |
43988682 |
cattgaaatgagtggcggaggagattggagaagaagattgagatattatagaaaagagagatgagctttccttgaaaaaaatataattattggatactta |
43988583 |
T |
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| Q |
301 |
cgacatttnnnnnnnccaacctcggtatccgactcaatgacatccacatgacatttaactggctacataccacttgcaacggcgtcagaaagcaagagtt |
400 |
Q |
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| T |
43988582 |
cgacatttaaaaa----aaactcggtatccgactcaatgacatccacatgacatttaacaggctacataccacttgcaacggcgtcagaaagcaagagtt |
43988487 |
T |
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| Q |
401 |
gatagatgtaacatttaagaatcaaagacgattatgaaatatttataatcttagcat |
457 |
Q |
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| T |
43988486 |
gatagatgtaacatttaagaatcaaagacgattatgaaatatttataatcttagcat |
43988430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 43976134 - 43976040
Alignment:
| Q |
23 |
aaaaataacatataaattaacaaaactatactcatcaaagatgcacaaaatcttaacattttaaattcgactacaataccctataaatttgaacat |
118 |
Q |
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| T |
43976134 |
aaaaataacataataattaattaaactaaattcatcaaagttgcacaaaa-cttaacatcccaaattcaaatacaataccctttaaatttgaacat |
43976040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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