View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_high_17 (Length: 471)

Name: NF3547_high_17
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_high_17
NF3547_high_17
[»] chr1 (3 HSPs)
chr1 (11-451)||(17535369-17535809)
chr1 (94-353)||(26407375-26407634)
chr1 (388-449)||(26407675-26407736)
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-303)||(37961-38252)
[»] chr5 (1 HSPs)
chr5 (94-353)||(27209405-27209664)
[»] chr4 (2 HSPs)
chr4 (94-353)||(26900992-26901251)
chr4 (388-449)||(26900890-26900951)
[»] chr3 (4 HSPs)
chr3 (94-353)||(23675489-23675748)
chr3 (94-353)||(24047765-24048024)
chr3 (388-449)||(23675789-23675850)
chr3 (388-449)||(24048065-24048126)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 17535809 - 17535369
Alignment:
Q  11 caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaatgaaagaaaatgaaagtttgaatgagtactttaatagactcac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17535809 caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaatgaaagaaaatgaaagtttgaattagtactttaatagactcac 17535710  T
Q  111 tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattgaaaaatatgatcatatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17535709 tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaatttgtttgattgaaaaatatgatcctatg 17535610  T
Q  211 gtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaaggttatcacgacgcaatg 310  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17535609 gtggctgttatagaagaaactaaggatctatcaaccatgattgtccaagggctgatggggtcacttagatcctatgagcaaaggttatcacgacgcaatg 17535510  T
Q  311 aaaagtcagttgaaagtgcctttcaatccaagctcaccattcaaccaaataatgagaaaatgatgtcccaaaataatggtgagtcttctagaggtggcag 410  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  17535509 aaaagtcagttgaaagtgcgtttcagtccaagctcaccattcaaccaaataatgagaaaatgatgtcccaaaataatggtgagtcttctagaggtggtat 17535410  T
Q  411 attttctagaggccgaggaagaggcggaaactctcgtggaa 451  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  17535409 attttctagaggccgtggaagaggcggaaactctcgtggaa 17535369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 94 - 353
Target Start/End: Original strand, 26407375 - 26407634
Alignment:
Q  94 tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg 193  Q
    ||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || |||||||  |    
T  26407375 tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag 26407474  T
Q  194 aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag 293  Q
     || || ||| |  ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| ||||||||||  | |||||||| ||||||||    
T  26407475 caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag 26407574  T
Q  294 gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca 353  Q
    | | | |||||    |||||| ||| |||| |||||||||||||| || |||| ||||||    
T  26407575 gatgttacgacattctgaaaaatcaattgagagtgcctttcaatctaaactcaacattca 26407634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 26407675 - 26407736
Alignment:
Q  388 ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg 449  Q
    |||||||||||||||||||||||||||   |||||| |||| |||||  ||||||| |||||    
T  26407675 ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg 26407736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 38252 - 37961
Alignment:
Q  11 caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaatgaaagaaaatgaaagtttgaatgagtactttaatagactcac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  38252 caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaat-aaagaaaatgaaagtttgaatgagtactttaatagactcgc 38154  T
Q  111 tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattgaaaaatatgatcatatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  38153 tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagcttgattgaaaaatatgatcctatg 38054  T
Q  211 gtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaaggttatcacga 303  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38053 gtggctgttatagaagaaactaaggatctatcaaccatgactttccaagggctgatggggtcacttagatcatatgagcaaaggttatcacga 37961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 94 - 353
Target Start/End: Complemental strand, 27209664 - 27209405
Alignment:
Q  94 tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg 193  Q
    ||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || |||||||  |    
T  27209664 tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag 27209565  T
Q  194 aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag 293  Q
     || || ||| |  ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| ||||||||||  | |||||||| ||||||||    
T  27209564 caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag 27209465  T
Q  294 gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca 353  Q
    | | | |||||    |||||| ||| |||| |||||||||||||| || |||| ||||||    
T  27209464 gatgttacgacattctgaaaaatcaattgagagtgcctttcaatctaaactcaacattca 27209405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 94 - 353
Target Start/End: Complemental strand, 26901251 - 26900992
Alignment:
Q  94 tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg 193  Q
    ||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || |||||||  |    
T  26901251 tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag 26901152  T
Q  194 aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag 293  Q
     || || ||| |  ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| ||||||||||  | |||||||| ||||||||    
T  26901151 caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag 26901052  T
Q  294 gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca 353  Q
    | | | |||||    |||||| ||| |||| |||||||||||||| || |||| ||||||    
T  26901051 gatgttacgacattctgaaaaatcaattgagagtgcctttcaatctaaactcaacattca 26900992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 26900951 - 26900890
Alignment:
Q  388 ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg 449  Q
    |||||||||||||||||||||||||||   |||||| |||| |||||  ||||||| |||||    
T  26900951 ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg 26900890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 94 - 353
Target Start/End: Original strand, 23675489 - 23675748
Alignment:
Q  94 tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg 193  Q
    ||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || |||||||  |    
T  23675489 tacttcaacagactctccgagttggtgaatcagatgaagtcgcatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag 23675588  T
Q  194 aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag 293  Q
     || || ||| |  ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| ||||||||||  | |||||||| ||||||||    
T  23675589 caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag 23675688  T
Q  294 gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca 353  Q
    | | | |||||    |||||| ||| |||| |||||||||||||| || |||| ||||||    
T  23675689 gatgttacgacattctgaaaaatcaattgagagtgcctttcaatcgaaactcaacattca 23675748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 94 - 353
Target Start/End: Original strand, 24047765 - 24048024
Alignment:
Q  94 tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg 193  Q
    ||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || |||||||  |    
T  24047765 tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag 24047864  T
Q  194 aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag 293  Q
     || || ||| |  ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| ||||||||||  | |||||||| ||||||||    
T  24047865 caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag 24047964  T
Q  294 gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca 353  Q
    | | | |||||    |||||| ||| |||| |||||||||||||| || |||| ||||||    
T  24047965 gatgttacgacattctgaaaaatcaattgagagtgcctttcaatcgaaactcaacattca 24048024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 23675789 - 23675850
Alignment:
Q  388 ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg 449  Q
    |||||||||||||||||||||||||||   |||||| |||| |||||  ||||||| |||||    
T  23675789 ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg 23675850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 24048065 - 24048126
Alignment:
Q  388 ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg 449  Q
    |||||||||||||||||||||||||||   |||||| |||| |||||  ||||||| |||||    
T  24048065 ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg 24048126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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