View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_21 (Length: 445)
Name: NF3547_high_21
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 44306974 - 44306588
Alignment:
| Q |
20 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306974 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
44306875 |
T |
|
| Q |
120 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306874 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
44306775 |
T |
|
| Q |
220 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgtt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44306774 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgttgatgaagctcatgctggagaaattgtt |
44306675 |
T |
|
| Q |
320 |
atgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44306674 |
atgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctgttagatatacaatgacttctgccgatgttcctact |
44306588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 43896520 - 43896137
Alignment:
| Q |
20 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
43896520 |
gtaattaggtatttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtctggaagcattgatgcgc |
43896421 |
T |
|
| Q |
120 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
219 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43896420 |
catttgttgcaaaggttttcacaaatgtgattaggaatgatggattagtaacttatctaagaatctatcagggtgttattaagaagggtgattttattac |
43896321 |
T |
|
| Q |
220 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgtt |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||| |||||||||||||||| |||||||| | | ||||||||||||||||||||| ||| || |
|
|
| T |
43896320 |
aaatgttaacactggtaagaagattcagattcctcgtttgtttaagagacatgatgataagattgaggaagttgatgaagctcatgctggagagattatt |
43896221 |
T |
|
| Q |
320 |
atgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcct |
403 |
Q |
| |
|
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43896220 |
attgtgttagatgctattcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgccgatgttcct |
43896137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 44301868 - 44301480
Alignment:
| Q |
20 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
44301868 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgcgc |
44301769 |
T |
|
| Q |
120 |
catttgttgcaaaggctttcacaaataatcttaacaggagtga------cttattaacttatctaagaatctatcagggtgttattaagaaggatgattt |
213 |
Q |
| |
|
||||||| ||||||| |||||||||| | | ||||||| ||| ||||||| |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
44301768 |
catttgtagcaaaggttttcacaaatt---tgtattggagtgatggattctt-ttaacttgtctaagaatctatcagggtgttatcaagaagggtgattt |
44301673 |
T |
|
| Q |
214 |
tattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||||||||||||| |||||| |
|
|
| T |
44301672 |
tattacaaatgttaacactggtgagaagattcagatttatagcttgtctaagagacatgatgatgtgattgagtttgttgatgaagctcatgccggagaa |
44301573 |
T |
|
| Q |
314 |
attgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
406 |
Q |
| |
|
|||||||| |||| | | | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
44301572 |
attgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtcttctgccgatgttcctact |
44301480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 44312755 - 44312372
Alignment:
| Q |
18 |
cagtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
44312755 |
cagtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatga |
44312656 |
T |
|
| Q |
118 |
gccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttatt |
217 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44312655 |
gccatttgtagcaaaggttttcacaaatatgtataggattaggtacttattaacttatctaagaatctatcagggtgttattaagaagggtgattttatt |
44312556 |
T |
|
| Q |
218 |
acaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattg |
317 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||| | ||| ||||||||||| ||| | ||||| || | | |||||||||||||||||||||||||| |
|
|
| T |
44312555 |
acaaacgttaacactggtaagaagattaagattccttgtttgggtaagagacattatggtaagattaaggaagttgatgaagctcatgctggagaaattg |
44312456 |
T |
|
| Q |
318 |
ttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttc |
401 |
Q |
| |
|
|| | |||| | |||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
44312455 |
tttttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataatgacttctgccgatgttc |
44312372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 43895669 - 43895619
Alignment:
| Q |
342 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
392 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
43895669 |
aatctggagatacttttgctgatgggtctgttagatattcaatgacctctg |
43895619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 44306093 - 44306043
Alignment:
| Q |
342 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
392 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||| |||| |
|
|
| T |
44306093 |
aatctggagatacttttgctgatgggtccgttagatattcaatgacctctg |
44306043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 18702128 - 18701741
Alignment:
| Q |
20 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
18702128 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtctggaagtattgatgcac |
18702029 |
T |
|
| Q |
120 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
219 |
Q |
| |
|
||||||||||||||||||| ||||| | | | ||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18702028 |
catttgttgcaaaggcttttgcaaattggcatgagaggtatttcaaattaacttatctaagaatctatcagggtgttattaagaagggtgattttattac |
18701929 |
T |
|
| Q |
220 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagac-atgatgatgagattgagtatgctgatgaagctcatgctggagaaattgt |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | ||| | ||||||| | | | || | || ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
18701928 |
aaatgttaacactggtaagaagattcagattcctcgtttgggcaagagacgaagttaataaaatcgaggaagttgatgaagctcatgctggagaaattgt |
18701829 |
T |
|
| Q |
319 |
tatgttgttcgatgctcttcttaaatctggagatactttcactg---atgggtctgttagatatacaatgacttctgcagatgttcct |
403 |
Q |
| |
|
| | | || ||||||| |||| |||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18701828 |
ttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatgggtctgttagatatacaatgacttctgctgatgttcct |
18701741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 4084638 - 4084249
Alignment:
| Q |
20 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
4084638 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcac |
4084539 |
T |
|
| Q |
120 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
219 |
Q |
| |
|
||||||||| ||||||||||||| || | || | | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
4084538 |
catttgttggaaaggctttcacatattggcataggccgtttttaaaattaacttatctaagaatctatcagggtgttatcaagaagggtgattttattac |
4084439 |
T |
|
| Q |
220 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgtt |
319 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||| | |||| ||||||||||||| || |||| || | |||||||||||||||||||||| ||||| |
|
|
| T |
4084438 |
aaatgttaacaccggtaagaagattaagattcctcgtttgtttaagagacatgataatacgattaaggcagttgatgaagctcatgctggagaacttgtt |
4084339 |
T |
|
| Q |
320 |
a---tgtt---gttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcct |
403 |
Q |
| |
|
| |||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
4084338 |
attgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattagatatacaatgacttctgccgatgttcct |
4084249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 8158836 - 8159230
Alignment:
| Q |
20 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
8158836 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctc |
8158935 |
T |
|
| Q |
120 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgactt---attaacttatctaagaatctatcagggtgttattaagaaggatgattttat |
216 |
Q |
| |
|
|||||||||||||||||||| || | | | | |||| | || ||||||||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
8158936 |
catttgttgcaaaggctttcgtaact--tggt-ataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggtgattttat |
8159032 |
T |
|
| Q |
217 |
tacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatg---atgatgagattgagtatgctg------------------at |
295 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| | ||| ||||||||| || ||||||||| |||| | | || || |
|
|
| T |
8159033 |
tacaaatgttaacactggtaagaagattgagattcctcgtttgggtaagagacgtgaacatgatgagagtgaggaagttgataaaatcaaggaagttgat |
8159132 |
T |
|
| Q |
296 |
gaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgc |
393 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
8159133 |
gaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgc |
8159230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 35856724 - 35856802
Alignment:
| Q |
166 |
attaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagatt |
244 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35856724 |
attaacatatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaacactggtgagaagatt |
35856802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 35856591 - 35856703
Alignment:
| Q |
29 |
tatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttg |
128 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||||||||||||| | || |||||| |||||| | |||||||||||||||||||||| ||| ||||| | |
|
|
| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatgggccgtttgtcg |
35856690 |
T |
|
| Q |
129 |
caaaggctttcac |
141 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35856691 |
cattggctttcac |
35856703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
| Q |
347 |
ggagatactttcactgatgggtctgttagatatacaatgacttc |
390 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15040348 |
ggagatacttttactgatgggtctgttaaatatacaatgacttc |
15040305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 10541444 - 10541388
Alignment:
| Q |
178 |
aagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactgg |
234 |
Q |
| |
|
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|
| T |
10541444 |
aagaatctatgagggtgtcattcggaagggagattttattacaaatgataacactgg |
10541388 |
T |
|
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