View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_25 (Length: 416)
Name: NF3547_high_25
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 20456938 - 20456551
Alignment:
| Q |
14 |
acctgtgtgggtattccaaaacttgatggtttcatcgccactgcctccaccagtagctagcaaattcgcttgaaaaggacaccaagcaagagcttttact |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20456938 |
acctgtgtgggtattccaaaacttgatggtttcatcgccactgcctccaccagtagctagcaaattcgcttggaaaggacaccaagcaagagcttttact |
20456839 |
T |
|
| Q |
114 |
gcagatgtatgatcttcaagcctgtgaagccactgtgttggagacctagaagttgatgtacttctatcccagatataaagttgattatcattccctccac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20456838 |
gcagatgtatgatcttcaagcctgtgaagccactgtgttggagacctagaagttgatgtacttctatcccagatataaagttgattatcattccctccac |
20456739 |
T |
|
| Q |
214 |
tggctaattgttgaccagaagccgaccatttcaatccgcaaacttctcgttcatgccctctgtatgtttcaacaatgtgtgctctaattcttacatcatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20456738 |
tggctaattgttgaccagaagccgaccatttcaatccgcaaacttctcgttcatgccctctgtatgtttcaacaatatgtgctctaattcttacatcatt |
20456639 |
T |
|
| Q |
314 |
attgataattctaccatccatccctccagttgtgagtgtgtggttattccatgccaaagaccctactcg---ctgcctatgcccacct |
398 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20456638 |
attgataattctaccatccatccctcctgttgtgagtatgtggttattccatgccaaagaccctactcgctgctgcctatgcccacct |
20456551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 1632988 - 1632604
Alignment:
| Q |
14 |
acctgtgtgggtattccaaaacttgatggtttcatcgccactgcctccaccagtagctagcaaattcgcttgaaaaggacaccaagcaagagcttttact |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||| |
|
|
| T |
1632988 |
acctgtgtgtgtattccaaaacttgatggttcgatcgccactgcctccaccagtagctagcaaattcccttggaatggacaccaagcaagagcctttact |
1632889 |
T |
|
| Q |
114 |
gcagatgtatgatcttcaagcctgtgaagccactgtgttggagacctagaagttgatgtacttctatcccagatataaagttgattatcattccctccac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||| |||||| |||||||||||||||||| |
|
|
| T |
1632888 |
gcagatgtatgatcttcaagcctgtgaagccactgtgtaggagaactagaagttgatgtacctctgtcccagatgtaaagtagattatcattccctccac |
1632789 |
T |
|
| Q |
214 |
tggctaattgttgaccagaagccgaccatttcaatccgcaaacttctcgttcatgccctctgtatgtttcaacaatgtgtgctctaattcttacatcatt |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1632788 |
tggctaattgttgaccggaagccgaccatttcaatccacaaacttcttgttcatgccctctgtatgtttcaacaatgtgtgctctaattcttacatcatt |
1632689 |
T |
|
| Q |
314 |
attgataattctaccatccatccctccagttgtgagtgtgtggttattccatgccaaagaccctactcgctgcctatgcccacct |
398 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1632688 |
attgataattttaccgtccatccctccggttgtgagtatgtggttgttccatgccaaagaccctactcgctgcctatgaccacct |
1632604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University