View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_28 (Length: 401)
Name: NF3547_high_28
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 43780842 - 43781219
Alignment:
| Q |
10 |
aagaatatagtggtgaacttctaatctgcttctcaatatgaaatatcaaacatcttctcattgttcaatgggtcaaacctttggcggtggaaacaaagta |
109 |
Q |
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| T |
43780842 |
aagaaaatagtggtgaacttctaatctgcttctcaatatgaaatatcaaacatcttctcattgttcaatgggtcaaacctttggcggtggaaacaaagta |
43780941 |
T |
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| Q |
110 |
gtgacttactagcgagttatcaaagtatgaattttaaaatcacactaccggtggtgtgctatgttatagcagtataggcttagtgttacttaattcaatc |
209 |
Q |
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| T |
43780942 |
gtgacttactagcgagttatcgaagtatgaattttaaaatcacactaccagtggtgtgctatgttatagcagtataggcttagtgttacttaattcaatc |
43781041 |
T |
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| Q |
210 |
ttttcatttgttttaggatgaagttggaatactttgtacatcataggtggtttttgaagaattgaaacagctactgtgaaactgtggaactataacgtta |
309 |
Q |
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| T |
43781042 |
ttttcatttgttttaggatgaagttggaatactttgtacatcataggtggtttttgaagaattgaaacagctactgtgaaactgtggaactataacgtta |
43781141 |
T |
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| Q |
310 |
cacccttgaatactttgtacatcatagatggtttctgaagtggattctggattgttatctagtaccatggtgtttatt |
387 |
Q |
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| T |
43781142 |
cacccttggatactttgtacatcatagatggtttctgaagtggattctggattgttatctagtaccatggtgtttatt |
43781219 |
T |
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