View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_high_3 (Length: 713)

Name: NF3547_high_3
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_high_3
NF3547_high_3
[»] chr1 (10 HSPs)
chr1 (385-698)||(31026701-31027019)
chr1 (76-328)||(31032180-31032434)
chr1 (385-528)||(31029731-31029872)
chr1 (389-528)||(31036701-31036838)
chr1 (601-698)||(31029536-31029633)
chr1 (601-698)||(31036506-31036603)
chr1 (601-698)||(31041703-31041800)
chr1 (392-528)||(31041884-31042020)
chr1 (21-76)||(31032587-31032640)
chr1 (402-470)||(31022879-31022948)
[»] chr3 (1 HSPs)
chr3 (146-207)||(10755806-10755867)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 385 - 698
Target Start/End: Complemental strand, 31027019 - 31026701
Alignment:
Q  385 ctagtacttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaactttcaagttcaaaccataagaatattacagttagtca 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31027019 ctagtacttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaactttcaagttcaaaccataagaatattacagttagtca 31026920  T
Q  485 aactaaacgaatttcaaaaactcgtacttcatgcatggagtcacnnnnnnnnnnnnnnnnnnngtttgcttcttccaaaacattcc---caca--ttcaa 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||                   |||||||| ||||||||||| ||   ||||  |||||    
T  31026919 aactaaacgaatttcaaaaactcgtacttcatgcatggagtcactatatatatccatatatatgtttgcttgttccaaaacataccattcacatcttcaa 31026820  T
Q  580 atctcaagcaaagaaacttgtaataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaaccta 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31026819 atctcaagcaaagaaacttgtaataaggcacaaaactagaaggaatttttttaattatttcatccaaattacattacattaatactacaaattaaaccta 31026720  T
Q  680 tatggctttttcttataat 698  Q
    |||||||||||||||||||    
T  31026719 tatggctttttcttataat 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 76 - 328
Target Start/End: Complemental strand, 31032434 - 31032180
Alignment:
Q  76 tttgatttccaaagtcgtgagtcctcaaaagctggcaaattttcgacctatttctttagttggcagcttatataaaattttatctaaggtttttgttaat 175  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  31032434 tttgatttccaaagtcgtaagtcctcaaaagctggcaaattttcgacctatttctttggttggctgcttatataaaattttatctaaggttcttgttaat 31032335  T
Q  176 aggctaaggaagatggttggtaaggttgtgtcagaatctcaatcgacttttgttcaataaa--nnnnnnnggatgatattttgatagccaacgaattagt 273  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||         |||||||||||||||||||||| |||||||    
T  31032334 aggctaaggaaggtggttggtaaggttgtgtcagaatctcagtcgacttttgttcaatgaatttttttttggatgatattttgatagccaacaaattagt 31032235  T
Q  274 agatgatgcgcgtaataataagacaccatgtctgtattttgatagccaacggggg 328  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31032234 agatgatgcgcgtaataataagacacagtgtctgtattttgatagccaacggggg 31032180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 385 - 528
Target Start/End: Complemental strand, 31029872 - 31029731
Alignment:
Q  385 ctagtacttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaactttcaagttcaaaccataagaatattacagttagtca 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||||    
T  31029872 ctagtacttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaactttcaagttcaaaccataaga--attgcaattagtca 31029775  T
Q  485 aactaaacgaatttcaaaaactcgtacttcatgcatggagtcac 528  Q
    | ||||||||||||||||||||||| ||||||||||||||||||    
T  31029774 agctaaacgaatttcaaaaactcgttcttcatgcatggagtcac 31029731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 389 - 528
Target Start/End: Complemental strand, 31036838 - 31036701
Alignment:
Q  389 tacttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaactttcaagttcaaaccataagaatattacagttagtcaaact 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||||| ||    
T  31036838 tacttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaactttcaagttcaaaccataaga--attgcaattagtcaagct 31036741  T
Q  489 aaacgaatttcaaaaactcgtacttcatgcatggagtcac 528  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  31036740 aaacgaatttcaaaaactcgttcttcatgcatggagtcac 31036701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 601 - 698
Target Start/End: Complemental strand, 31029633 - 31029536
Alignment:
Q  601 aataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat 698  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31029633 aataaggcacaaaactagaaggaatttttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat 31029536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 601 - 698
Target Start/End: Complemental strand, 31036603 - 31036506
Alignment:
Q  601 aataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat 698  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31036603 aataaggcacaaaactagaaggaatttttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat 31036506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 601 - 698
Target Start/End: Complemental strand, 31041800 - 31041703
Alignment:
Q  601 aataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat 698  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041800 aataaggcacaaaactagaaggaaattttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat 31041703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 392 - 528
Target Start/End: Complemental strand, 31042020 - 31041884
Alignment:
Q  392 ttgttttcgtgtgtatagtttggtgcacaagaagtttgattcgttcaattgtcaac--tttcaagttcaaaccataagaatattacagttagtcaaacta 489  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||| |||||| |||||||| ||     
T  31042020 ttgttttcgtgtgtataatttggggcacaagaagtttgattcgttcaatcgtcaactttttcaagttcaaaccataagaa-attacaattagtcaagctc 31041922  T
Q  490 aacgaatttcaaaaactcgtacttcatgcatggagtcac 528  Q
    |||||||||| |||||| || |||||| |||||||||||    
T  31041921 aacgaatttc-aaaacttgtgcttcattcatggagtcac 31041884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 31032640 - 31032587
Alignment:
Q  21 tttgttgaattctatcacaacggtaagctcactaaaggtttacataatacttttat 76  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  31032640 tttgttgaattctatcacaac--taagctcactaaaggtttacataatacttttat 31032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 470
Target Start/End: Complemental strand, 31022948 - 31022879
Alignment:
Q  402 gtgtatagtttggtgcacaagaa-gtttgattcgttcaattgtcaactttcaagttcaaaccataagaat 470  Q
    |||| |||||||||||||||||| ||||||||||||| | | ||||| ||||||||||| ||||| ||||    
T  31022948 gtgtttagtttggtgcacaagaaagtttgattcgttctactttcaaccttcaagttcaacccatacgaat 31022879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 10755867 - 10755806
Alignment:
Q  146 tataaaattttatctaaggtttttgttaataggctaaggaagatggttggtaaggttgtgtc 207  Q
    ||||||||||||||||| ||||| | |||| |||| || ||| ||||||||||||| |||||    
T  10755867 tataaaattttatctaaagttttggctaatcggcttagaaaggtggttggtaaggtggtgtc 10755806  T

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