View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_33 (Length: 355)
Name: NF3547_high_33
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 13773960 - 13774294
Alignment:
| Q |
6 |
cagagacagtagttggttctcctaattggtaatcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccatccaatgtattagg |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
13773960 |
cagaaacagtagttggttctcctaattggtagtcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccttctaatgtattagg |
13774059 |
T |
|
| Q |
106 |
gtttggtgcatttttgttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatga |
205 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
13774060 |
gtttggtgcatttttattgaaccatttttcaaagccatctttgcatcctaatggtgaactatcttgcttgattgatataattgaagctcctctatgatga |
13774159 |
T |
|
| Q |
206 |
atttgttgtggataatttgatccatatcccaccatgtaactcatttgttttggattagaacccaatatgtagtccacctataatgttgtgtccacggaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13774160 |
atttgttgtggataatttgatccatatcccaccatgtaactcatctgttttggattagaacccaatatgtagtccacctataatgttgtgtccacggaaa |
13774259 |
T |
|
| Q |
306 |
aaat----tagcaaattaaacatcgaacatatgaa |
336 |
Q |
| |
|
||| ||| |||||||||||||||||||||| |
|
|
| T |
13774260 |
aaaaaaaatagtgaattaaacatcgaacatatgaa |
13774294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 13764119 - 13764398
Alignment:
| Q |
13 |
agtagttggttctcctaattggtaatcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccatccaatgtattagggtttggt |
112 |
Q |
| |
|
||||||||| || |||||||| ||||||| ||| |||| |||||| ||||||||||||||| |||||||| |||||| || ||| |||||||||||||| |
|
|
| T |
13764119 |
agtagttggctcccctaattgaaaatcattcctactatcagtaaaaccatcattttgatctgaactcacaactgctccttctaatatattagggtttggt |
13764218 |
T |
|
| Q |
113 |
gcatttttgttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatgaatttgtt |
212 |
Q |
| |
|
|||||||| ||||| ||||| | || |||||||| ||| ||||||| | |||| | |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13764219 |
gcatttttattgaaccatttttgaataccatcttgacatgtaactggtgcattatcatctttgattgatacaattgatgatcctctatgatgaatttgtt |
13764318 |
T |
|
| Q |
213 |
gtggataatttgatccatatcccaccatgtaactcatttgttttggattagaacccaatatgtagtccacctataatgtt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
13764319 |
ttggataatttgatccatatcccaccatgtaactcatatttcttggattagaacccaaaatgtagtccatctaaaatgtt |
13764398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 17264568 - 17264695
Alignment:
| Q |
122 |
ttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatgaatttgttgtggataat |
221 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17264568 |
ttgaaccatttttcaaagccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctacgatgaatttgttgtggataac |
17264667 |
T |
|
| Q |
222 |
ttgatccatatcccaccatgtaactcat |
249 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
17264668 |
ttgttccatatcccaccatgtaactcat |
17264695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University