View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_37 (Length: 340)
Name: NF3547_high_37
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 32704304 - 32703992
Alignment:
| Q |
18 |
ggatgtccatacaaatattattaatacacaccaatgctatgtgat-atgacccataactaata-gtgaaaatgtctctaattttccaacttgtccagaga |
115 |
Q |
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| T |
32704304 |
ggatgtccatacaaatattattaatacac--caatgctatgtgatcatgacccataactaataagtgaaaatgtctctaatattccaacttgtccagaga |
32704207 |
T |
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| Q |
116 |
tagtcgattacgaaaatatagttgcatcagttgacttcctaaagtgggtgacgaggagtatgatgattgaccataataccaagaggattggtaatacctc |
215 |
Q |
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| T |
32704206 |
tagtcgagtacaaaaatatagttgcatcagttgacttcctaaagtgggtgacgaggagtatgatgattgaccataataccaagaggatcggtaacacctc |
32704107 |
T |
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| Q |
216 |
attgtatgatgtttagacatgtttgtaggtcattttcaataagcatttgaagacaattcagaggatttttagattatttgctcatggtttgagacatatt |
315 |
Q |
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| T |
32704106 |
atcgtatgatgtttagatatgtttgtaggtcatttttaataagcatttgaagacaattcataggatttttagattatttgctcatggtttaagacatatt |
32704007 |
T |
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| Q |
316 |
ttatattattttcat |
330 |
Q |
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| T |
32704006 |
ttgtattattttcat |
32703992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 33559919 - 33559971
Alignment:
| Q |
253 |
aataagcatttgaagacaattcagaggatttttagattatttgctcatggttt |
305 |
Q |
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| T |
33559919 |
aataagcatttaaaaacaatttataggagttttagatgatttgctcatggttt |
33559971 |
T |
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