View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_4 (Length: 685)
Name: NF3547_high_4
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 38631168 - 38630731
Alignment:
| Q |
18 |
aaatgacagagtttctgagaagggatttggaaactaaaggttccatcttcacgtttcaaagccgctatactgaagaggagtttgaacaaacagcaggatt |
117 |
Q |
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| T |
38631168 |
aaatgacagagtttctgagaagggatttggaaactaaaggttccatcttcacgtttcaaagccgctatgctgaagaggagtttgaacaaacagcaggatt |
38631069 |
T |
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| Q |
118 |
ctggggttacctcatgcaaattacatatcaggttaagtttcttccagaacattaattatgatgaatatttgttttctaatttgtcaccaatattctaatc |
217 |
Q |
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| T |
38631068 |
ctggggttacctcatgcaaattacatttcaggttaagtttcttcaagaacattaattatgatgaatatttgttttctaatttgtcaccaatattctaatc |
38630969 |
T |
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| Q |
218 |
cagttgaaactgatattctgcatttggcagaccagtgcaggggctgtcatattaacagatattgtcttttggtgcgttattgtcccatttttatccattt |
317 |
Q |
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| T |
38630968 |
cagttgaaactgatattctgcatttggcagaccagtgcagggtctatcatattaacagatattgtcttttggtgcgttattgtcccatttttatccattt |
38630869 |
T |
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| Q |
318 |
ctcgttttaagctaaacatggtatgtgcacttcttctatatatatcacatattcttagtaatttacataataatatgaatgaaattcaacaaatatttgc |
417 |
Q |
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| T |
38630868 |
ctcgttttaagctaaacatggtatgtgcacttcttctatatatatcacatattcttagtaatttacataataatatgaatgaaattcaacaaatatttgt |
38630769 |
T |
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| Q |
418 |
atgatagattgataattgatctttggaacttggaagta |
455 |
Q |
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| T |
38630768 |
atgatagattgataattgatctttggaacttggaagta |
38630731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 454 - 673
Target Start/End: Complemental strand, 38630701 - 38630474
Alignment:
| Q |
454 |
tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggataccatgctgaacaatcttgtaagtaacacactcactagaa------- |
546 |
Q |
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| T |
38630701 |
tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggatactatgctgaacaatcttgtaagtaacacactcactagagaagtaga |
38630602 |
T |
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| Q |
547 |
-cataaaactaagcactaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt |
645 |
Q |
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| T |
38630601 |
gcataaaactaagcaccaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt |
38630502 |
T |
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| Q |
646 |
ggtttagaatagcatattttgtgctctg |
673 |
Q |
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| T |
38630501 |
ggtttagaatagcatattttgtgctctg |
38630474 |
T |
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Back To:
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