View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_high_45 (Length: 310)

Name: NF3547_high_45
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_high_45
NF3547_high_45
[»] chr4 (26 HSPs)
chr4 (95-294)||(32391104-32391303)
chr4 (1-95)||(56424024-56424118)
chr4 (5-94)||(6487371-6487460)
chr4 (1-89)||(51967243-51967331)
chr4 (1-95)||(3860233-3860327)
chr4 (1-95)||(3868990-3869084)
chr4 (1-95)||(40162749-40162843)
chr4 (6-95)||(25013406-25013495)
chr4 (1-94)||(40487708-40487800)
chr4 (1-94)||(21486476-21486569)
chr4 (16-93)||(29966446-29966523)
chr4 (1-92)||(9972736-9972827)
chr4 (7-94)||(26448592-26448679)
chr4 (1-91)||(8563407-8563497)
chr4 (1-63)||(54561211-54561273)
chr4 (1-50)||(41470375-41470424)
chr4 (7-83)||(14334366-14334442)
chr4 (1-63)||(23170780-23170842)
chr4 (5-56)||(8084208-8084259)
chr4 (37-84)||(26955301-26955348)
chr4 (5-56)||(29469162-29469213)
chr4 (7-91)||(2326716-2326801)
chr4 (5-56)||(33138799-33138850)
chr4 (1-56)||(49501231-49501286)
chr4 (1-56)||(49507296-49507351)
chr4 (9-91)||(21306362-21306444)
[»] chr1 (21 HSPs)
chr1 (1-95)||(7798481-7798575)
chr1 (1-94)||(18954447-18954540)
chr1 (1-93)||(1108335-1108427)
chr1 (1-91)||(34751618-34751708)
chr1 (9-86)||(34019109-34019186)
chr1 (32-83)||(29027978-29028029)
chr1 (1-48)||(33886906-33886953)
chr1 (1-48)||(33957297-33957344)
chr1 (5-56)||(4005087-4005138)
chr1 (1-56)||(5494794-5494849)
chr1 (5-56)||(8147337-8147388)
chr1 (5-56)||(9192044-9192095)
chr1 (1-54)||(32760145-32760198)
chr1 (5-53)||(1243356-1243404)
chr1 (5-56)||(41353441-41353492)
chr1 (1-56)||(46328433-46328488)
chr1 (5-56)||(49971646-49971697)
chr1 (5-56)||(51106912-51106963)
chr1 (9-55)||(11579154-11579200)
chr1 (1-54)||(48177139-48177192)
chr1 (198-250)||(18928354-18928406)
[»] chr5 (16 HSPs)
chr5 (1-94)||(25868760-25868853)
chr5 (5-94)||(2675125-2675214)
chr5 (3-91)||(34909556-34909644)
chr5 (1-88)||(21238806-21238893)
chr5 (5-94)||(33892893-33892982)
chr5 (5-92)||(24258534-24258621)
chr5 (25-91)||(19222987-19223053)
chr5 (5-56)||(7125216-7125267)
chr5 (5-86)||(31913467-31913548)
chr5 (21-85)||(16497803-16497867)
chr5 (1-56)||(4240165-4240220)
chr5 (1-91)||(16800693-16800783)
chr5 (5-55)||(28623218-28623268)
chr5 (6-55)||(16548897-16548946)
chr5 (6-54)||(15286586-15286634)
chr5 (11-55)||(29758706-29758750)
[»] chr3 (18 HSPs)
chr3 (5-94)||(9818615-9818704)
chr3 (7-88)||(37832539-37832620)
chr3 (9-85)||(40064248-40064324)
chr3 (26-94)||(49293764-49293832)
chr3 (17-95)||(27261367-27261443)
chr3 (9-91)||(30238550-30238633)
chr3 (1-92)||(53645360-53645451)
chr3 (6-91)||(19386942-19387027)
chr3 (17-91)||(9031981-9032055)
chr3 (38-82)||(27994855-27994899)
chr3 (5-56)||(8598658-8598709)
chr3 (5-56)||(49296115-49296166)
chr3 (1-56)||(16155163-16155218)
chr3 (5-56)||(25049870-25049921)
chr3 (5-91)||(2118488-2118573)
chr3 (5-55)||(4962782-4962832)
chr3 (5-91)||(7665555-7665641)
chr3 (7-56)||(53835961-53836010)
[»] chr6 (11 HSPs)
chr6 (1-94)||(7835410-7835503)
chr6 (1-91)||(8779627-8779717)
chr6 (5-95)||(31996298-31996388)
chr6 (5-94)||(21199515-21199604)
chr6 (5-56)||(1463721-1463772)
chr6 (5-56)||(6788099-6788150)
chr6 (5-89)||(12028941-12029025)
chr6 (36-84)||(15381593-15381641)
chr6 (5-56)||(10113830-10113881)
chr6 (1-54)||(13461374-13461427)
chr6 (1-53)||(7497548-7497600)
[»] chr7 (15 HSPs)
chr7 (1-95)||(14732341-14732435)
chr7 (1-94)||(35313518-35313611)
chr7 (1-94)||(21024027-21024120)
chr7 (1-94)||(19594172-19594264)
chr7 (1-94)||(38910442-38910535)
chr7 (7-82)||(37392676-37392751)
chr7 (1-86)||(34656574-34656659)
chr7 (5-56)||(14741425-14741476)
chr7 (6-56)||(4639925-4639975)
chr7 (3-56)||(12740816-12740869)
chr7 (10-91)||(27148809-27148890)
chr7 (1-56)||(48136932-48136987)
chr7 (5-79)||(1254518-1254592)
chr7 (5-54)||(11735240-11735289)
chr7 (58-94)||(6213015-6213051)
[»] scaffold0433 (1 HSPs)
scaffold0433 (1-95)||(350-444)
[»] chr2 (14 HSPs)
chr2 (1-94)||(19948499-19948592)
chr2 (1-94)||(38413501-38413594)
chr2 (1-89)||(12877652-12877740)
chr2 (5-89)||(13898442-13898526)
chr2 (5-89)||(14039059-14039143)
chr2 (1-94)||(41978798-41978891)
chr2 (1-94)||(33262814-33262907)
chr2 (1-55)||(3991773-3991827)
chr2 (1-91)||(11153397-11153487)
chr2 (18-91)||(43318813-43318886)
chr2 (5-56)||(18899979-18900030)
chr2 (9-84)||(30850239-30850314)
chr2 (1-56)||(40829635-40829690)
chr2 (1-51)||(24025852-24025902)
[»] scaffold0246 (2 HSPs)
scaffold0246 (1-95)||(1327-1421)
scaffold0246 (1-94)||(25647-25739)
[»] chr8 (8 HSPs)
chr8 (5-101)||(28317122-28317218)
chr8 (5-91)||(1527955-1528041)
chr8 (5-94)||(41252125-41252214)
chr8 (5-91)||(33177898-33177984)
chr8 (5-56)||(19484214-19484265)
chr8 (1-56)||(32497989-32498044)
chr8 (1-56)||(10295037-10295092)
chr8 (1-53)||(41393958-41394010)
[»] scaffold1128 (1 HSPs)
scaffold1128 (1-56)||(951-1006)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-56)||(57763-57818)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 95 - 294
Target Start/End: Original strand, 32391104 - 32391303
Alignment:
Q  95 ggtccaaggatttgaccaactaattcaatgagttcaatctcactattcacttgcggaggcaccacttgaagctagagcaaaactaaaattgacaccgaag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32391104 ggtccaaggatttgaccaactaattcaatgagttcaatctcactattcacttgcggaggcgccacttgaagctagagcaaaactaaaattgacaccgaag 32391203  T
Q  195 aataattgaacctaagaccttaagaaaagcacactttaatgtctcaagtcaacaccgttagcccaattcaagtggcttataatctttaatcctttgattc 294  Q
    || |||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  32391204 aaaaattgaacctaagatcttaagagaagcacactttaatgtttcaagtcaacatcgttagcctaattcaagtggcttataatctttaattctttgattc 32391303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 56424024 - 56424118
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  56424024 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacattcgctttgtggaacagtgg 56424118  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 6487371 - 6487460
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  6487371 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcaagtttacgtgttaacactcgatttgtggatcagtg 6487460  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 51967331 - 51967243
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaa 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  51967331 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtggaa 51967243  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3860233 - 3860327
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  3860233 aaaccgagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtgaaacagtgg 3860327  T

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Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3868990 - 3869084
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  3868990 aaaccgagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtgaaacagtgg 3869084  T

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Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40162843 - 40162749
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  40162843 aaaccgagtttatctccgaatttacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactcgatttgtggaacagtgg 40162749  T

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Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 25013495 - 25013406
Alignment:
Q  6 gagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25013495 gagtttagctccgagttaacatgtttttgccacctaaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtggaacagtgg 25013406  T

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Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 40487708 - 40487800
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||| ||||||||||||||||||||||||||    
T  40487708 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc-agagagtttacgagttaacactcgatttgtggaacagtg 40487800  T

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Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21486569 - 21486476
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  21486569 aaaccgagtttaccttcgagtttacacggttttgccacctaaaaacgtaaactcgaacgagtttacgagttaacactcgatttgtggaacagtg 21486476  T

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Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 29966446 - 29966523
Alignment:
Q  16 ccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagt 93  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29966446 ccgagtttacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgagttaacactcgatttgtggaacagt 29966523  T

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Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9972827 - 9972736
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacag 92  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |||| |||||| ||||| ||||||||||||||||||    
T  9972827 aaaccgagtttacctccgagtttacacgtttttgccacctaaaaacataaactcgagcgaatttacgagttaatactcgatttgtggaacag 9972736  T

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Target: chr4; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 26448679 - 26448592
Alignment:
Q  7 agtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  26448679 agtttacctccgagtttacatgtttttgccacctaaaaatgtaaactcgagcgagtttacgagttaacactcgatttgtggaacagtg 26448592  T

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Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 8563407 - 8563497
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||| ||||||||||||||||| ||| || ||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  8563407 aaaccgagtttatctccgagttaacacgtttttgtcatctaaaaacgtaaactcgtgcgagtttacaagttaacactcgatttgtggaaca 8563497  T

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Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 54561273 - 54561211
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtt 63  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||    
T  54561273 aaaccgagtttacctccgagtttacatgtttttgccacctaaaaatgtaaactcgggcgagtt 54561211  T

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Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41470375 - 41470424
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaa 50  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41470375 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaa 41470424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 14334442 - 14334366
Alignment:
Q  7 agtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgattt 83  Q
    ||||||| |||||||| || || | |||  |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14334442 agtttacgtccgagtttacgcgattttggtacctaaaaacgtaaactcgggcaagtttacgttttaacactcgattt 14334366  T

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Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23170780 - 23170842
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtt 63  Q
    |||||||  |||||||||| ||||||| || |||||||||||||||||||||| |||||||||    
T  23170780 aaaccgaaattacctccgaattaacacatttttgccacctaaaaacgtaaacttgggcgagtt 23170842  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 8084259 - 8084208
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  8084259 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 8084208  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 26955348 - 26955301
Alignment:
Q  37 acctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttg 84  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  26955348 acctaaaaacgtaaattcgggcaagtttacgttttaacactcgatttg 26955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 29469213 - 29469162
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  29469213 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 29469162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 2326716 - 2326801
Alignment:
Q  7 agtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactc-gatttgtggaaca 91  Q
    ||||||| ||| |||| ||||| | |||  ||||||||||||||| || ||||||||||||| ||||||||| |||||||| ||||    
T  2326716 agtttacatccaagtttacacgattttggtacctaaaaacgtaaattcaggcgagtttacgttttaacactcggatttgtgaaaca 2326801  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 33138850 - 33138799
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||| | |||  ||||||| ||||||||||||    
T  33138850 cgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcgg 33138799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49501231 - 49501286
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | ||   ||||||||||||||||||||    
T  49501231 aaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgg 49501286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49507296 - 49507351
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | ||   ||||||||||||||||||||    
T  49507296 aaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgg 49507351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 21306362 - 21306444
Alignment:
Q  9 tttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    ||||| || ||||||||||||| ||| |||||| ||| |||||||  | ||| |||||| |||||||||  ||||||||||||    
T  21306362 tttacttctgagttaacacgtttttggcacctacaaatgtaaactacgacgaatttacgagttaacactttatttgtggaaca 21306444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7798575 - 7798481
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7798575 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtgttaatactcgatttgtggaacagtgg 7798481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18954540 - 18954447
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  18954540 aaaccgagtttacgtccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgaatttacgagttaacactcgatttgtggaacagtg 18954447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1108427 - 1108335
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagt 93  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||    
T  1108427 aaaccgagtttacctccgagtttacacgtttttaccacctaaaaacgtaaactcagacgaatttacgagttaacactcgatttgtggaacagt 1108335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34751618 - 34751708
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||| |||||| |||||| ||| ||||||||||||    
T  34751618 aaaccgagtttacctccgagttaacacgtttttgccatttaaaaacgtaaactcggtcgaatttacgagttaaccctcaatttgtggaaca 34751708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 34019186 - 34019109
Alignment:
Q  9 tttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtg 86  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||    
T  34019186 tttacctccgagttaacacatttttgccaccttaaaacgtaaactcggacgagtttacgagttaacactcaatttgtg 34019109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 29028029 - 29027978
Alignment:
Q  32 ttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgattt 83  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29028029 ttgccacctaaaaacgtaaactcggacgagtttacgagttaacactcgattt 29027978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33886906 - 33886953
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgt 48  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33886906 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgt 33886953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33957344 - 33957297
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgt 48  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33957344 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgt 33957297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 4005138 - 4005087
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  4005138 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 4005087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5494794 - 5494849
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | |||  ||||||||||||||||||||    
T  5494794 aaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcgg 5494849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 8147388 - 8147337
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  8147388 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 8147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9192095 - 9192044
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  9192095 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 9192044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32760145 - 32760198
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactc 54  Q
    |||||||||||||||| ||||||||||| | |||  ||||||||||||||||||    
T  32760145 aaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactc 32760198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 1243356 - 1243404
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaact 53  Q
    |||||||||||||||||||||||||| ||  |||||||| |||||||||    
T  1243356 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaact 1243404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 41353492 - 41353441
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| || |||||||||    
T  41353492 cgagtttacctccgagttaacacgtttttagcacctaaacacataaactcgg 41353441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46328488 - 46328433
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | ||   ||||||||||||||||||||    
T  46328488 aaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgg 46328433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 49971646 - 49971697
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||| ||||| | |||  ||||||||||||||||||||    
T  49971646 cgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgg 49971697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 51106963 - 51106912
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    ||||||| |||||||||||||||||| ||  |||||||| ||||||||||||    
T  51106963 cgagttttcctccgagttaacacgtttttagcacctaaacacgtaaactcgg 51106912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11579154 - 11579200
Alignment:
Q  9 tttacctccgagttaacacgttcttgccacctaaaaacgtaaactcg 55  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||||    
T  11579154 tttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 11579200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48177139 - 48177192
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactc 54  Q
    ||||||| |||||||| ||||||||||| | || | ||||||||||||||||||    
T  48177139 aaaccgattttacctcagagttaacacgatttttctacctaaaaacgtaaactc 48177192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 18928406 - 18928354
Alignment:
Q  198 aattgaacctaagaccttaagaaaagcacactttaatgtctcaagtcaacacc 250  Q
    |||||||||| ||||||| |||  |||||||||||| |||||||| |||||||    
T  18928406 aattgaacctgagaccttgagaggagcacactttaaggtctcaagccaacacc 18928354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25868853 - 25868760
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25868853 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacataaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 25868760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 2675125 - 2675214
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  2675125 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtattaacactcgatttgtgaaacagtg 2675214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 34909644 - 34909556
Alignment:
Q  3 accgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34909644 accgagtttacctccgaattaacacgtttttgccacctaaaaacgtaaactcgagcgagtttacgtgttaacactcgatttgtggaaca 34909556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21238806 - 21238893
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtgga 88  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  21238806 aaaccgagtttacctccgagttaacacgtttttgccatctaaaaacgtaaaatcggacgaatttacgtgttaacactcgatttgtgga 21238893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 33892893 - 33892982
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||  ||| ||||||||||||||||||||||||| |||||||    
T  33892893 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaattcgaacgaatttacgtgttaacactcgatttgtgcaacagtg 33892982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 24258534 - 24258621
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacag 92  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| || ||||| |||| | ||||||||||||||| ||||||||    
T  24258534 cgagtttacctccgagtttacacgtttttgccacctaaaaacgtaaattcaggcgaatttaggagttaacactcgatttatggaacag 24258621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 19223053 - 19222987
Alignment:
Q  25 cacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  19223053 cacgtttttgccacctaaaaatgtaaactcgggcgagtttacgagttaacactcaatttgtggaaca 19222987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 7125216 - 7125267
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  7125216 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 7125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 31913548 - 31913467
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtg 86  Q
    ||||||||||||| ||||||||| || ||| || |||||||| |||| |||  ||| |||||| |||||||| |||||||||    
T  31913548 cgagtttacctccaagttaacacatttttgacatctaaaaacataaattcgaacgaatttacgagttaacacacgatttgtg 31913467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 16497803 - 16497867
Alignment:
Q  21 ttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgt 85  Q
    ||||||| || ||| |||||||||||||||||||    ||||||||| |||||||||||||||||    
T  16497803 ttaacacatttttggcacctaaaaacgtaaactcaaatgagtttacgagttaacactcgatttgt 16497867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4240165 - 4240220
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||| ||||||||||| ||||||||||| | ||  |||||||||||||||||||||    
T  4240165 aaacggagtttacctcagagttaacacgatttttgcacctaaaaacgtaaactcgg 4240220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 16800783 - 16800693
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||| |||| | |||||| || || ||  |||||||||| |||||||||    |||||||| |||||||||| ||||||||||||    
T  16800783 aaaccgagttcaccttcaagttaaaacatttttaacacctaaaaatgtaaactcgaaaaagtttacgagttaacactccatttgtggaaca 16800693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 28623218 - 28623268
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcg 55  Q
    |||||||| ||||||||||||||||| ||  |||||||| |||||||||||    
T  28623218 cgagtttatctccgagttaacacgtttttagcacctaaacacgtaaactcg 28623268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 16548897 - 16548946
Alignment:
Q  6 gagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcg 55  Q
    ||||||||||||||||| ||||| | |||  |||||||||||||||||||    
T  16548897 gagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcg 16548946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 15286586 - 15286634
Alignment:
Q  6 gagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactc 54  Q
    ||||||| ||||||||| ||||| | ||| |||||||||||||||||||    
T  15286586 gagtttatctccgagtttacacgattttgacacctaaaaacgtaaactc 15286634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 29758750 - 29758706
Alignment:
Q  11 tacctccgagttaacacgttcttgccacctaaaaacgtaaactcg 55  Q
    |||||||||||||||||| | |||  |||||||||||||||||||    
T  29758750 tacctccgagttaacacgattttgatacctaaaaacgtaaactcg 29758706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 9818615 - 9818704
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818615 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 9818704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 37832620 - 37832539
Alignment:
Q  7 agtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtgga 88  Q
    |||||| |||||| || ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |||| ||||    
T  37832620 agtttatctccgaatttacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactcaatttatgga 37832539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 40064324 - 40064248
Alignment:
Q  9 tttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgt 85  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||    
T  40064324 tttacctccaagtttacacgtttttgccacctaaaaacgtaaactcggacgaatttacgaattaacactcgatttgt 40064248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 49293832 - 49293764
Alignment:
Q  26 acgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||||||    
T  49293832 acgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactcgatttatgaaacagtg 49293764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 27261443 - 27261367
Alignment:
Q  17 cgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||| ||||||| ||||||| |||||||  |||||||||| |||||||| |||||||||||||||||||||||||||    
T  27261443 cgagtttacacgtttttgccacttaaaaac--aaactcgggcaagtttacgagttaacactcgatttgtggaacagtgg 27261367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 30238550 - 30238633
Alignment:
Q  9 tttacctccgagttaacacgttcttgc-cacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||   ||| ||||| |||||||||||||||||||||||    
T  30238550 tttacctccgagttaacacgttttttcgcacctaaaaacgtaaactcgatagagattacgcgttaacactcgatttgtggaaca 30238633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 53645360 - 53645451
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacag 92  Q
    |||| ||||||||||| ||||| | ||||| ||||||||||||||||| ||||| | |||||||||| ||||||||||||||| | ||||||    
T  53645360 aaactgagtttacctctgagtttatacgtttttgccacctaaaaacgttaactcagacgagtttacgagttaacactcgatttttagaacag 53645451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 19386942 - 19387027
Alignment:
Q  6 gagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||| ||||||||||||| || ||| |||||||| |||||||||||   ||| ||| | |||||||||||||||||||||||    
T  19386942 gagtttacatccgagttaacacatttttgacacctaaatacgtaaactcgtatgagattatgagttaacactcgatttgtggaaca 19387027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 9031981 - 9032055
Alignment:
Q  17 cgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||| | |||||||||||| |||||||||| ||| |||||| ||||||| | ||||||| |||||    
T  9031981 cgagttaacacgttttggccacctaaaaatgtaaactcggacgaatttacgagttaacatttgatttgttgaaca 9032055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 27994855 - 27994899
Alignment:
Q  38 cctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatt 82  Q
    |||||| |||||||||||||||||||||||| |||||||||||||    
T  27994855 cctaaacacgtaaactcgggcgagtttacgttttaacactcgatt 27994899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 8598709 - 8598658
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  8598709 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 8598658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 49296166 - 49296115
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  49296166 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 49296115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16155218 - 16155163
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | |||  ||||||||||||||| ||||    
T  16155218 aaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaattcgg 16155163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 25049921 - 25049870
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||| ||||| | |||  ||||||||||||||||||||    
T  25049921 cgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgg 25049870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 2118488 - 2118573
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    ||||||||||| |||||||||||||| ||  ||||| |||| ||| |||||| |||||||||  |||||||||  |||||| |||||    
T  2118488 cgagtttaccttcgagttaacacgttttttgcacct-aaaatgtacactcggacgagtttactagttaacacttaatttgtagaaca 2118573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 4962782 - 4962832
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcg 55  Q
    ||||||||||||| |||||||||| | |||  |||||||||||||||||||    
T  4962782 cgagtttacctccaagttaacacgattttgatacctaaaaacgtaaactcg 4962832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 7665641 - 7665555
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||||||||||||| | |||  | ||||||||||||||| ||   | |   || |||||||||||||||||||||||    
T  7665641 cgagtttacctccgagttaacacgattttggtagctaaaaacgtaaactaggtaaattcggcgagttaacactcgatttgtggaaca 7665555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 53836010 - 53835961
Alignment:
Q  7 agtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    ||||||||||| |||||||||||| ||  |||||||| ||||||||||||    
T  53836010 agtttacctccaagttaacacgtttttagcacctaaacacgtaaactcgg 53835961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 7835410 - 7835503
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7835410 aaaccgagtttacctccgacttaacacgtttttgccacctaaaaacgtaaactcggacgagtttacgtgttaacactcgatttgtggaacagtg 7835503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 8779627 - 8779717
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  8779627 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactcgatttgtgaaaca 8779717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 31996298 - 31996388
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||    
T  31996298 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgagcgagtttgcgtgttaacactcgatttgtgatacagtgg 31996388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 21199604 - 21199515
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||  ||||||||||| | ||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||||||||    
T  21199604 cgagtttaccttggagttaacacggttttgccacctaaaaacgtaaactttggcaagtttacgagttaacactcgatttgtggaacagtg 21199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 1463721 - 1463772
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  1463721 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 1463772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 6788150 - 6788099
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  6788150 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 6788099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 12029025 - 12028941
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaa 89  Q
    ||||||||||||  |||||||||||| ||| | ||||||||| |||| ||   | |||||| | |||||||||||||||||||||    
T  12029025 cgagtttacctcaaagttaacacgtttttgacccctaaaaacataaagtcaaacaagtttatgagttaacactcgatttgtggaa 12028941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 15381593 - 15381641
Alignment:
Q  36 cacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttg 84  Q
    |||||||||||||||||| |  ||||||||||| |||||||||||||||    
T  15381593 cacctaaaaacgtaaacttgatcgagtttacgttttaacactcgatttg 15381641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 10113830 - 10113881
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||   ||||||| ||||||||||||    
T  10113830 cgagtttacctccgagttaacacgtttttaggacctaaacacgtaaactcgg 10113881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13461427 - 13461374
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactc 54  Q
    |||||||||||||||||||||| ||||| | |||  || |||||||||||||||    
T  13461427 aaaccgagtttacctccgagttgacacgattttgatacataaaaacgtaaactc 13461374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7497600 - 7497548
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaact 53  Q
    |||||||||||||||| ||||||||||| | ||   |||||||||||||||||    
T  7497600 aaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaact 7497548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14732341 - 14732435
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  14732341 aaaccaagtttacctccgagttaacacgtttttgccacctaaaaacgtaaacttgagcgagtttacgtgttaacactcgatttgtggaacagtgg 14732435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 35313611 - 35313518
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35313611 aaaccgaatttacctccgagttaacacggttttgccatctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 35313518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21024120 - 21024027
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  21024120 aaaccgagtttaccttcgagttaacacgtttttgtcacctaaaatcgtaaactcgggcgaatttacgtgttaacactcgatttgtgaaacagtg 21024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19594264 - 19594172
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||| |||| |||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  19594264 aaaccgagtttatctcctagtttacacgtt-ttgccatctaaaaacgtaaactcgggcgagtttacgagttaaaactcgatttgtggaacagtg 19594172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38910535 - 38910442
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||| |||||| |||||| |||||||||||||| ||||||||||||| ||||| ||  ||||| ||||||||| ||||||||||||||||    
T  38910535 aaaccgagcttaccttcgagtttacacgttcttgccatctaaaaacgtaaattcgggtgaacttacgagttaacacttgatttgtggaacagtg 38910442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 37392676 - 37392751
Alignment:
Q  7 agtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatt 82  Q
    |||||| ||||||||| ||| ||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  37392676 agtttatctccgagtttacatgtttttgccacctaaaaacgtaaactcggacgaatttacgagttaacactcgatt 37392751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34656659 - 34656574
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtg 86  Q
    ||||||| ||||| ||||| || ||||||| || |||||||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  34656659 aaaccgaatttacttccgaatttacacgtttttaccacctaaaaacgtaaactcggacgagtacacgagttaacactcgatttgtg 34656574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 14741476 - 14741425
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  14741476 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 14741425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 4639925 - 4639975
Alignment:
Q  6 gagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    ||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  4639925 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 4639975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 12740869 - 12740816
Alignment:
Q  3 accgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||| ||||||||||| | |||  ||||||||||||||||||||    
T  12740869 accgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcgg 12740816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 27148890 - 27148809
Alignment:
Q  10 ttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||| |||||||| | |||  |||||||||||||||||||    | ||| || |||||||||||||||||||||||    
T  27148890 ttacctccgatttaacacgattttgatacctaaaaacgtaaactcgataaactttgcgagttaacactcgatttgtggaaca 27148809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48136932 - 48136987
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||| ||||||||||| ||||||||||| | |||  ||||||||||||||||||||    
T  48136932 aaactgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcgg 48136987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 1254518 - 1254592
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcg 79  Q
    ||||||||||| ||| |||| |  || ||| ||||||||| ||||||||| |||||||||||| |||||| ||||    
T  1254518 cgagtttaccttcgatttaaaaaatttttgacacctaaaatcgtaaactcaggcgagtttacgagttaactctcg 1254592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 11735240 - 11735289
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactc 54  Q
    |||||||||||||||||||||||| | |||  |||||||| |||||||||    
T  11735240 cgagtttacctccgagttaacacgattttgggacctaaaatcgtaaactc 11735289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 6213051 - 6213015
Alignment:
Q  58 cgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||| |||||||||| |||||||||||||||    
T  6213051 cgagtttacgagttaacactcaatttgtggaacagtg 6213015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 444 - 350
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  444 aaaccgagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtgaaacagtgg 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19948592 - 19948499
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  19948592 aaactgagtttacctccgagttaacacgtttttgccacctaaaaatgtaaactcgggcgagtttacatgttaacactcgatttgtgaaacagtg 19948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 38413501 - 38413594
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  38413501 aaaccgagtttacctccgagtttacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactcgatttatggaacagtg 38413594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12877740 - 12877652
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaa 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||    
T  12877740 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcggacgaatttacgagttaacactcgatttatggaa 12877652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 13898526 - 13898442
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaa 89  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  13898526 cgagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactcagacgagtttacgtgttaacactcgatttgtggaa 13898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 14039143 - 14039059
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaa 89  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  14039143 cgagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactcagacgagtttacgtgttaacactcgatttgtggaa 14039059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 41978891 - 41978798
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||||||  |||| ||||||||| |||||||||| |||||||||| ||||    
T  41978891 aaaccgagtttacctccgaattaacatgtttttgccacctaaaaacgtaaagccgggtgagtttacgagttaacactcaatttgtggaagagtg 41978798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33262907 - 33262814
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||  |||||||||| ||||| |||  |||| ||||||||||    
T  33262907 aaaccgagtttaccttcgagtttacacgtttttgccacctaaaaacgtaaactcgaacgagtttacgagttaatacttaatttatggaacagtg 33262814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3991827 - 3991773
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcg 55  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3991827 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 3991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11153397 - 11153487
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||||||||||||||||| | |   |||||||||||||||| |||  |||||||||| |||||||||| ||||||||||||    
T  11153397 aaaccgagtttacctccgagttaacacgatttcagcacctaaaaacgtaaattcgtccgagtttacgagttaacactcaatttgtggaaca 11153487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 43318813 - 43318886
Alignment:
Q  18 gagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    ||||||||||||| ||  ||| ||||||||||||||||  |||||| ||| |||||||||||||||||||||||    
T  43318813 gagttaacacgtttttagcacataaaaacgtaaactcgaacgagttaacgagttaacactcgatttgtggaaca 43318886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 18899979 - 18900030
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  18899979 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 18900030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 30850314 - 30850239
Alignment:
Q  9 tttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttg 84  Q
    |||||||||||||| | ||| | ||| ||||||||||||||||| | ||||||||||||| | || ||||||||||    
T  30850314 tttacctccgagtttatacgattttggcacctaaaaacgtaaacgcaggcgagtttacgtttcaatactcgatttg 30850239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40829690 - 40829635
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||||| | |||  ||||||||| ||| ||||||    
T  40829690 aaaccgagtttacctccgagttaacacgattttgatacctaaaaatgtagactcgg 40829635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24025902 - 24025852
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaa 51  Q
    |||||||||||| |||| |||||||||||| ||| ||||||||||| ||||    
T  24025902 aaaccgagtttatctccaagttaacacgtttttgacacctaaaaacttaaa 24025852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 1421 - 1327
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgg 95  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  1421 aaaccgagtttacctccaagttaacatgtttttgccacctaaaaacgtaaactcggtcgagtttacgagttaacactcgatttgtgaaacagtgg 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25647 - 25739
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||| ||||||||||||||||||||||||||    
T  25647 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc-agagagtttacgagttaacactcgatttgtggaacagtg 25739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 28317122 - 28317218
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtgggtccaa 101  Q
    ||||||||||||||||||  ||| || |||||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||| |||||    
T  28317122 cgagtttacctccgagttttcacctttttgccacctaaaaacgtaaattcggacgagtttacgaattaacactcgatttgtagaacagtggttccaa 28317218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 1527955 - 1528041
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| | || | | ||||||  ||||||||||||||||||||||    
T  1527955 cgagtttacctccgagttaacacgtttttgccacttaaaaacgtaaaattggacaaatttacgatttaacactcgatttgtggaaca 1528041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 41252214 - 41252125
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtg 94  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||||||  ||| |||||  | |||||||||||||||||| |||||    
T  41252214 cgagtttacttccgagttaacacgtttttgccacctaaaaaagtaaactcgaacgaatttacaagctaacactcgatttgtggagcagtg 41252125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 33177898 - 33177984
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaaca 91  Q
    ||||||||||| | | ||||||| || |||  |||||||||| |||| ||| ||||||||||| |||||||||| ||||||||||||    
T  33177898 cgagtttaccttcaaattaacacatttttggtacctaaaaacataaaatcgtgcgagtttacgagttaacactcaatttgtggaaca 33177984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 19484265 - 19484214
Alignment:
Q  5 cgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||| ||  |||||||| || |||||||||    
T  19484265 cgagtttacctccgagttaacacgtttttagcacctaaacacataaactcgg 19484214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32498044 - 32497989
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | ||   ||||||||||||||||||||    
T  32498044 aaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgg 32497989  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10295037 - 10295092
Alignment:
Q  1 aaaccgagtttacctccgagttaacacg-ttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| || |||  ||||||||||||||||||||    
T  10295037 aaaccgagtttacctcagagttaacacgattgttg-tacctaaaaacgtaaactcgg 10295092  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41394010 - 41393958
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaact 53  Q
    |||| |||||||||||||| |||||||| | |||  |||||||||||||||||    
T  41394010 aaactgagtttacctccgaattaacacgattttgatacctaaaaacgtaaact 41393958  T

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Target: scaffold1128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 951 - 1006
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||||||||||||||| | |||  ||||||| ||||||||||||    
T  951 aaaccgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcgg 1006  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 57763 - 57818
Alignment:
Q  1 aaaccgagtttacctccgagttaacacgttcttgccacctaaaaacgtaaactcgg 56  Q
    |||||||||||||||| ||||||||||| | ||   ||||||||||||||||||||    
T  57763 aaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgg 57818  T

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