View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_49 (Length: 307)
Name: NF3547_high_49
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 39392366 - 39392079
Alignment:
| Q |
1 |
aatgtcctcactaaaagttaggtcctaatcgcttatgtttgggacttaaatcttgatcccatgtttagaagttactaaccgatccaataatgggaggtta |
100 |
Q |
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| T |
39392366 |
aatgtccttactaaaagttaggtcctaatcgcttatgtttgggacttaaatctttatcccatgtttagaagttacgaaccgatccaataatgggaggtta |
39392267 |
T |
|
| Q |
101 |
tggtgtgaattgcactggacacaaaaacatgttgcgttgcacataacataagggcatgtaaaggtatgttaaacacattaatcacacaaacacaatacaa |
200 |
Q |
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| T |
39392266 |
tggtgtgaattgcactggacacgag--catgttgcgttgcacataacataagggcatgtaaaggtatgttaaacacattaatcacacaaacacaatagaa |
39392169 |
T |
|
| Q |
201 |
caaaacaaagttacactaagcgtctgtttggttccgcgttgggaatccataaacgtacgtttgagagtgttcactttggcttttccattt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
39392168 |
caaaacaaagttacactaagcgtctgtttggttccgcgttgggaatccataaacgtacgtttgagagtgttcaccgtagcttttccattt |
39392079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 37008537 - 37008468
Alignment:
| Q |
221 |
cgtctgtttggttccgcgttgggaatccataaacgtacgtttgagagtgttcactttggcttttccattt |
290 |
Q |
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| T |
37008537 |
cgtctatttggttccgcgtttggaacccataaacgtacttttaagagtgttcaccgtggcttttccattt |
37008468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 23208097 - 23208024
Alignment:
| Q |
217 |
taagcgtctgtttggttccgcgttgggaatccataaacgtacgtttgagagtgttcactttggcttttccattt |
290 |
Q |
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| T |
23208097 |
taagtgtctgtttggttccgcgttgggaacccataaacgtacctttgagagtgttcaccgtggcttttccattt |
23208024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 28426504 - 28426430
Alignment:
| Q |
216 |
ctaagcgtctgtttggttccgcgttgggaatccataaacgtacgtttgagagtgttcactttggcttttccattt |
290 |
Q |
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||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| | |||||| ||||| |
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| T |
28426504 |
ctaagcgtctgtttggttctgcgtttggaacccataaacgtacgtttgagagtgttcactgtagctttttcattt |
28426430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 40230161 - 40230089
Alignment:
| Q |
218 |
aagcgtctgtttggttccgcgttgggaatccataaacgtacgtttgagagtgttcactttggcttttccattt |
290 |
Q |
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||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
40230161 |
aagcgtctgtttgattccgcgtttggaacccataaacgtacgtttgagaatgttcaccgtagcttttccattt |
40230089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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