View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_52 (Length: 298)
Name: NF3547_high_52
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_52 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 51808641 - 51808358
Alignment:
| Q |
4 |
ggcatgggtttttgttaaaaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatctgatacgatatg |
103 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51808641 |
ggcatggggttttgttaaagagcacgcgccgaatgatctcttgcatcaataactttatcaacaatatgttgacagcaaaatttgcatctgatacgatatg |
51808542 |
T |
|
| Q |
104 |
aatgaaccgtgtgcatctattttcaacggtcaatctcaggtcaa-taacaactgtaatttcgttgcatgttgtatgttatatcttaaattctttgttatt |
202 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51808541 |
aatgaaccatgtgcatctattttcaacggtcaatctcaggtcaaataacaactgtaatttcgttgcatgttgtatgttatatcttaaattctttgttatt |
51808442 |
T |
|
| Q |
203 |
atgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51808441 |
atgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
51808358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 51804516 - 51804409
Alignment:
| Q |
178 |
gttatatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttt |
277 |
Q |
| |
|
||||||||||||||||||| | |||||| |||| |||||||||||| |||||||||| | || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
51804516 |
gttatatcttaaattctttatg-ttatgctctaagagtggacttgttctattcatctaagcatgcttgagaaattgcctgctcgatatatttgaaagttt |
51804418 |
T |
|
| Q |
278 |
tctgatatt |
286 |
Q |
| |
|
||||||||| |
|
|
| T |
51804417 |
tctgatatt |
51804409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 51804713 - 51804639
Alignment:
| Q |
17 |
gttaaaaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatc |
91 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
51804713 |
gttacaaagcacatgccaaatgatctcttgcattaacaactttatcaacaatatgttgacagccaagtttacatc |
51804639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 51780679 - 51780640
Alignment:
| Q |
247 |
gaaattgcctgctcgagatatttgaaagttttctgatatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51780679 |
gaaattgcctgctcgagatatttgaaagttttctgatatt |
51780640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 51773195 - 51773139
Alignment:
| Q |
22 |
aaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacag |
78 |
Q |
| |
|
|||||||||| | ||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
51773195 |
aaagcacgcgtcaaatgatctcgtttatccacaactttatcaacaatatgttgacag |
51773139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 51790411 - 51790337
Alignment:
| Q |
35 |
aatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatctgatacgatatgaatgaa |
109 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||| ||| | || |||||| | ||||||||||||| |
|
|
| T |
51790411 |
aatgatttcttgcatctactactttatcaacaatatgttgaaagccatgtctgcatccgtgccgatatgaatgaa |
51790337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 51780811 - 51780779
Alignment:
| Q |
47 |
catcaacaactttatcaacaatatgttgacagc |
79 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
51780811 |
catccacaactttatcaacaatatgttgacagc |
51780779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 7335 - 7284
Alignment:
| Q |
235 |
actcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7335 |
actcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
7284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University