View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_60 (Length: 271)
Name: NF3547_high_60
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 28796175 - 28796417
Alignment:
| Q |
13 |
aggagcacagatgaacatgcttcaaatcaatgtgaaaccttaatatcaagattagttcatgagaatgtctatgttctattttttagactactggatatct |
112 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
28796175 |
aggaacactgatgaacatgcttcaaatcaatgtgaaaccttaatatcaagattagttcgtgagaatgtctatgctctattttttagattaccggatatct |
28796274 |
T |
|
| Q |
113 |
tat-cttggttttcaactttttaaggtattttgtccccatctttttgtacaacctaatatgtttggtttaattgcgannnnnnnnncaattaacgaattc |
211 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28796275 |
tatccttggttttcaactttttaaggtatcttgtccccatctttttgtacaacctaatatgtttggtttaattgcgattttttttttaattaacgaattt |
28796374 |
T |
|
| Q |
212 |
atgcgatgttagtaattttttaatgattttgaccgttgatctt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28796375 |
atgcgatgttagtaattttttaatgattttgaccgttgatctt |
28796417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 28798778 - 28798947
Alignment:
| Q |
22 |
gatgaacatgcttcaaatcaatgtgaaaccttaatatcaagattagttcatgagaatgtctatgttctattttttagacta--ctggatatcttatc-tt |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| || |
|
|
| T |
28798778 |
gatgaacgtgcttcaaatcaatgtgaaacttgaatgtcaagattagtttgtgagaatgtctatgttctcttttttagactatactggatatcttatcctt |
28798877 |
T |
|
| Q |
119 |
ggttttcaactttttaaggtattttgtccccatctttttgtacaacctaatatgtttggtttaattgcga |
188 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28798878 |
ggttttcaaccttttaaggtattttggccccatctttttgtacaacctaatatgtttggtttaattgcga |
28798947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 28796974 - 28796817
Alignment:
| Q |
30 |
tgcttcaaatcaatgtgaaaccttaatatcaagattagttcatgagaa---tgtctatgttctattttttagactactggatatcttat-cttggttttc |
125 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||||| |||||| |||||||||||| || |||||| | |||||||||||| |||||||||| |
|
|
| T |
28796974 |
tgcttcaaatcaatgtgaaaccataacatccagattagttcgtgagaactttgtctatgttctgttgtttagagttttggatatcttatccttggttttc |
28796875 |
T |
|
| Q |
126 |
aactttttaaggtattttgtccccatctttttgtacaacctaatatgtttggtttaattg |
185 |
Q |
| |
|
|| ||||||||||| || ||||||| ||||||||| | | ||||||||||||||||| |
|
|
| T |
28796874 |
aaatttttaaggta--ttcaccccatcattttgtacatcacattatgtttggtttaattg |
28796817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University