View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_61 (Length: 271)
Name: NF3547_high_61
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_61 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 8690618 - 8690367
Alignment:
| Q |
10 |
aataccacctatgttgctaatcagcaaataccacggtccatatttatagttgattgatcacttttcaagtatatataatatgatataatgtaacataata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690618 |
aataccacctatgttgctaatcagcaaataccacggtccatatttatagttgattgatcacttttcaagtatatataatatgatataatgtaacataata |
8690519 |
T |
|
| Q |
110 |
caactaatcgattcatttttaaatttatatcttctgcacgtaattgccaagacctgtgaagtatggacatctctagaacactcatatgacactcgtaaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690518 |
caactaatcgattcatttttaaatttatatcttctgcacgtaattgccaagacctgtgaagtatggacatctctagaacactcatatgacactcgtaaga |
8690419 |
T |
|
| Q |
210 |
catgtgttgaacaattcagaaatgtatctcaaataaaattgttttttccttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690418 |
catgtgttgaacaattcagaaatgtatctcaaataaaattgttttttccttt |
8690367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University