View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_62 (Length: 263)
Name: NF3547_high_62
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 12700825 - 12700647
Alignment:
| Q |
79 |
gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatcaactctgcggctacagaacca |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
12700825 |
gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccatatcaactctgcggccacagaacca |
12700726 |
T |
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| Q |
179 |
caaagc--------------ctcaaacacgccttagccacgcacaagaacacgcctatatatttaatatggaagaagct |
243 |
Q |
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| T |
12700725 |
caaagcctcatacctcaagcctcaaacacgccttagctacgcacaagaacacgcctatatatttaatatggaagaagct |
12700647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12700901 - 12700848
Alignment:
| Q |
1 |
gcaaattgaatttaaacaaatacatgtaccaacagcaggaggaaaatgcagcac |
54 |
Q |
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| T |
12700901 |
gcaaattgaatttaaacaaatacatgtaccaacagcaggaggaaaatgcagcac |
12700848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 23169479 - 23169624
Alignment:
| Q |
79 |
gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatcaactctgcggctacagaacca |
178 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
23169479 |
gctagaatgcctagagagcaaaacagaaccagcaacaacaggcatagtattaggccaaaaaactccctccaaccgtatcaactctgcggccacagaacca |
23169578 |
T |
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| Q |
179 |
caaagcctcaaacacgccttagccacgcacaagaacacgcctatat |
224 |
Q |
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| T |
23169579 |
cgaagcctcaaacacgccttagccacgctcaagtacacgcctatat |
23169624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23169403 - 23169456
Alignment:
| Q |
1 |
gcaaattgaatttaaacaaatacatgtaccaacagcaggaggaaaatgcagcac |
54 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23169403 |
gcaaattgaatttaaacaaatacatgtaccaacagcaggaggaaaatgcagcac |
23169456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 19753562 - 19753384
Alignment:
| Q |
79 |
gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatcaactctgcggctacagaacca |
178 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19753562 |
gctagaaagtctaaagagcaaaacagaaccagcaacaacaggcatagtgttaggccaaaaaactccccccaaccgtatcaactctgcggccacagaacca |
19753463 |
T |
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| Q |
179 |
caaagc--------------ctcaaacacgccttagccacgcacaagaacacgcctatatatttaatatggaagaagct |
243 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19753462 |
caaagcctcatacctcaagcctcaaacacgccttagcgacgcacaagaacacgcctatatatttaatatggaagaagct |
19753384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19753638 - 19753585
Alignment:
| Q |
1 |
gcaaattgaatttaaacaaatacatgtaccaacagcaggaggaaaatgcagcac |
54 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19753638 |
gcaaattgaatttaaacaaatacatgtaccaacagcatgaggaaaatgcagcac |
19753585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 41740590 - 41740512
Alignment:
| Q |
80 |
ctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatca |
158 |
Q |
| |
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|||||| ||||||| | ||||| |||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |
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| T |
41740590 |
ctagaatgcctagaaatcaaaatagaaccagcaacaataggcaacctgttaggccaaaaaaaatcccgcaaccgtatca |
41740512 |
T |
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