View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_64 (Length: 261)
Name: NF3547_high_64
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 6961411 - 6961278
Alignment:
| Q |
119 |
ggtaagtctagcaaatcttccactatggatgagttatttgagtcgttaggtgagttgttccacagatttatacgcacaagcaacaccttacccatttatt |
218 |
Q |
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| T |
6961411 |
ggtaagtctagcaaatcttccactatggatgagttatttgagtcgttaggttagttgttccacaaatttatacgcacaagcaacaccttacccatttatt |
6961312 |
T |
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| Q |
219 |
ttcgctcttcccttcgtctcctttatctctctgc |
252 |
Q |
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| T |
6961311 |
ttcgctcttcccttcgtctcctttatctctctgc |
6961278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 29227120 - 29227238
Alignment:
| Q |
1 |
ctagtcatcatgacaatgattctataataattacatttgactcatcttatgataattacagttgactagtgctattgattacaatgattcagtcaatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29227120 |
ctagtcatcatgacaatgattctataataattacatttgactcatcttatcataattacaattgactagtgctattgattacaatgattcagtcaatcat |
29227219 |
T |
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| Q |
101 |
aggattcattctctaactg |
119 |
Q |
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| T |
29227220 |
aggattcattctctaactg |
29227238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 29340419 - 29340537
Alignment:
| Q |
1 |
ctagtcatcatgacaatgattctataataattacatttgactcatcttatgataattacagttgactagtgctattgattacaatgattcagtcaatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29340419 |
ctagtcatcatgacaatgattctataataattacatttgactcatcttatcataattacaattgactagtgctattgattacaatgattcagtcaatcat |
29340518 |
T |
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| Q |
101 |
aggattcattctctaactg |
119 |
Q |
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||||||||||||||||||| |
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| T |
29340519 |
aggattcattctctaactg |
29340537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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