View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_66 (Length: 258)
Name: NF3547_high_66
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_66 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 37066503 - 37066275
Alignment:
| Q |
20 |
aacagagtcttccacattggaccaaggtgaaaacccagttgccatttcaacaatagtgcaaccaagtgaccaaacatcacaagggaacccttgttcttcg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37066503 |
aacagagtcttccacattggaccaaggtgaaaaaccagttgccatttcaacaatagtgcaaccaagtgaccaaacatcacaagggaacccttgttcttcg |
37066404 |
T |
|
| Q |
120 |
ctgcgcgccacctccggcgccatatacatcggtgttccggcagccggcacaatttcatcgatcatctttgcacaaccaaagtctccaattttaactcctt |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37066403 |
ccgcgcgccacctccggcgccatatacatcggtgttccggcagctggcgcaatttcatcgatcatctttgcacaaccaaagtctcctattttaactcctt |
37066304 |
T |
|
| Q |
220 |
tttcacataccaatatgttactacctttg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37066303 |
tttcacataccaatatgttactacctttg |
37066275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 17501263 - 17501336
Alignment:
| Q |
45 |
ggtgaaaacccagttgccatttcaacaatagtgcaaccaagtgaccaaacatcacaagggaacccttgttcttc |
118 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||||||||||||||| ||||| || ||| |||||||||| |
|
|
| T |
17501263 |
ggtgaagaaccagttgccatttcaattatagtgcaaccaagtgaccaaatatcactagaaaactcttgttcttc |
17501336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University