View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_68 (Length: 253)
Name: NF3547_high_68
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_68 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 7644724 - 7644626
Alignment:
| Q |
138 |
gtgcctgcattattcaaaatttctgaatccgcagacattaagatgatccacttgcaatgaaaagaacaaacaagaggaaccactttcctctccaaaaac |
236 |
Q |
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| T |
7644724 |
gtgcctgcattattcaaaatttctggctccggagacactaagatgacccacttgcaatgaaaagaacaaacaagaggaaccactttcctctccaaaaac |
7644626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 7644809 - 7644768
Alignment:
| Q |
8 |
gattgaaaatgagaaaaacaatcaatatttctaaaaaccgac |
49 |
Q |
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| T |
7644809 |
gattgaaaatgagaaaaacatttaatatttctaaaaaccgac |
7644768 |
T |
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