View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_75 (Length: 245)
Name: NF3547_high_75
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_75 |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 42918876 - 42918804
Alignment:
| Q |
156 |
actaagaaaaattatattaaagcaacagacaactcctcaagtacaagaagtgcttaagagaactgcaaagtta |
228 |
Q |
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| T |
42918876 |
actaagaaaaattatattaaagcaacagacaactcctcaagcacaaggagtgcttaagagagctgcaaagtta |
42918804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19345834 - 19345900
Alignment:
| Q |
1 |
cctgccataaaattcaagagatattacaatcataacctatataggagcataaatgatgtgctttcct |
67 |
Q |
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| T |
19345834 |
cctgccacaaaatgcaagagatatttcaatcataacctacataggagcataaatgatgtgttttcct |
19345900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 6384988 - 6384913
Alignment:
| Q |
151 |
aagagactaagaaaaattatattaaagcaacagacaactcctcaagtacaagaagtgcttaagagaactgcaaagt |
226 |
Q |
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| T |
6384988 |
aagagactaaaagaaaatatattaaagcaacagacaactcctcaaacacaaggagtgtttaagagagctgtaaagt |
6384913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 19345944 - 19345983
Alignment:
| Q |
106 |
atcaatcatgatcgtcagattataaaaaacatttaacttt |
145 |
Q |
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| T |
19345944 |
atcaatcatgatcgtcaaattataaaaaatatttaacttt |
19345983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 47985533 - 47985595
Alignment:
| Q |
157 |
ctaagaaaaattatattaaagcaacagacaactcctcaagtacaagaagtgcttaagagaactg |
220 |
Q |
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| T |
47985533 |
ctaagaaaaatt-tattaaagtaacacacaactcctcaagcacaagatgtgcttaagagaactg |
47985595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 45820501 - 45820424
Alignment:
| Q |
149 |
tgaagagactaagaaaaattatattaaagcaacagacaactcctcaagtacaagaagtgcttaagagaactgcaaagt |
226 |
Q |
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|||||| ||||||| |||||| |||||| ||||| ||||||||||||| | ||| |||||| || || ||||||||| |
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| T |
45820501 |
tgaagaaactaagagaaattaaattaaaacaacaaacaactcctcaagcataaggggtgcttgagtgagctgcaaagt |
45820424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 52962167 - 52962222
Alignment:
| Q |
169 |
atattaaagcaacagacaactcctcaagtacaagaagtgcttaagagaactgcaaagt |
226 |
Q |
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|||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
52962167 |
atattaaagcaacaaacaactcctcaag--caaggagtgcttaagagagctgcaaagt |
52962222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 31636118 - 31636037
Alignment:
| Q |
149 |
tgaagagactaagaaaaattatattaaagcaacagacaactcct----caagtacaagaagtgcttaagagaactgcaaagt |
226 |
Q |
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|
|||||| ||||||||||||||||||||||||||| || |||||| |||| ||||| |||||||||| | ||||||||| |
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| T |
31636118 |
tgaagaaactaagaaaaattatattaaagcaacatactactcctaaagcaagcacaaggagtgcttaaggtagctgcaaagt |
31636037 |
T |
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