View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_high_78 (Length: 239)
Name: NF3547_high_78
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_78 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 46324231 - 46324452
Alignment:
| Q |
18 |
aggaatgtcaatattagactgatgcgagagagaggaaaagaaatgaacttaccagcaggcgaaaatcagtgaatctttaggtttgggcacattcaaaagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46324231 |
aggaatgtcaatattagactgatgcgagagagaggaaaagaaatgaacttaccagcaggtgaaaatcggtgaatctttaggtttgggcacattcaaaagg |
46324330 |
T |
|
| Q |
118 |
tcgcaagcgtagtgatccttcaggaaactcatgcattctaaatggttctaagagctcaaagggcctgcagaaaaaagaatcagctaaccacagtatgtcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46324331 |
tcgcaagcgtagtgatccttcaggaaactcatgcattctaaatggttctaagagctcaaagggcctgcagaaaaaagaatcagctaaccacagtatgtcc |
46324430 |
T |
|
| Q |
218 |
taaatggctgtgatttgttttc |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46324431 |
taaatggctgtgatttgttttc |
46324452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University