View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_82 (Length: 238)
Name: NF3547_high_82
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_82 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 31468703 - 31468490
Alignment:
| Q |
16 |
aaaaatacaggctaacaacatatgtacctgcaacaagtctaaaatccaacagttcaagtccattttattgtcgtaaatacttctaattgtacatagtctg |
115 |
Q |
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| T |
31468703 |
aaaaatacagactaacaacatatgtacctgcaacaagtctaaaatccaacagttcaagtccattttattgtcgtaaatacttctaattgttcatagtctg |
31468604 |
T |
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| Q |
116 |
acacaacttcaacattcaagggttaaattttctgcaatttacttctctacttattcttgattttaattctccatcattactaccaaattcatctaattct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31468603 |
acacaacttcaacattcaagggttaaattttctgcaatttacttctctacttattcttgattttaattctccatcattactaccaaattcatgtaattct |
31468504 |
T |
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| Q |
216 |
agctacaaccccta |
229 |
Q |
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||||||||| |||| |
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| T |
31468503 |
agctacaacaccta |
31468490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 31476099 - 31476251
Alignment:
| Q |
16 |
aaaaatacaggctaacaacatatgtacctgcaacaagtctaaaatccaacag--ttcaagtccattttattgtcgtaaatacttctaattgtacatagtc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
31476099 |
aaaaatacaggctaacaacatatgtacctgcaacaagtctaaaatccaacagagttcatgtccagtttattgtcgtaaatacttctaattgttcatagtc |
31476198 |
T |
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| Q |
114 |
tgacacaacttcaacattcaagggttaaattttctgcaatttacttctctact |
166 |
Q |
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| T |
31476199 |
tcacacaacttcaacattcaagggttaaattttctgcaatttacttctctact |
31476251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 31467265 - 31467201
Alignment:
| Q |
163 |
tacttattcttgattttaattctccatcattactaccaaattcatctaattctagctacaacccc |
227 |
Q |
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| T |
31467265 |
tactcattcttgattttaattctccatcattgctaccaacttcatctaattctagctacagcccc |
31467201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 31476275 - 31476336
Alignment:
| Q |
168 |
attcttgattttaattctccatcattactaccaaattcatctaattctagctacaaccccta |
229 |
Q |
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| T |
31476275 |
attcttgattttaattctccatcattactaaaaatttcatctaattctagcgacagccccta |
31476336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 31467348 - 31467284
Alignment:
| Q |
97 |
tctaattgtacatagtctgacacaacttcaacattcaagggttaaattttctgcaatttacttctctact |
166 |
Q |
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| T |
31467348 |
tctaattgttcatagtctcacacaacttgaacat-----ggttaaattttctgcaatttaattctctact |
31467284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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