View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_high_85 (Length: 237)

Name: NF3547_high_85
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_high_85
NF3547_high_85
[»] chr2 (3 HSPs)
chr2 (17-88)||(41231826-41231897)
chr2 (139-189)||(44940403-44940453)
chr2 (187-221)||(17931212-17931246)
[»] chr7 (5 HSPs)
chr7 (143-189)||(4164212-4164258)
chr7 (143-189)||(34206503-34206549)
chr7 (143-221)||(45459555-45459633)
chr7 (187-221)||(34206453-34206487)
chr7 (187-215)||(4164168-4164196)
[»] chr4 (4 HSPs)
chr4 (143-189)||(38947798-38947844)
chr4 (143-189)||(53679034-53679080)
chr4 (187-221)||(38947860-38947894)
chr4 (187-215)||(19837264-19837292)
[»] chr3 (5 HSPs)
chr3 (143-189)||(16896496-16896542)
chr3 (143-181)||(11584243-11584281)
chr3 (143-189)||(19233238-19233284)
chr3 (187-221)||(19233188-19233222)
chr3 (187-220)||(16896558-16896591)
[»] chr6 (3 HSPs)
chr6 (143-189)||(1308588-1308634)
chr6 (143-186)||(26711408-26711451)
chr6 (187-221)||(16467542-16467576)
[»] chr8 (1 HSPs)
chr8 (143-189)||(41691681-41691727)
[»] chr5 (1 HSPs)
chr5 (187-221)||(2681864-2681898)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 41231897 - 41231826
Alignment:
Q  17 caaagggacccgtctatgttgtagattattgaagaatctagctgaaattaccaggcatgtaactatgcaaat 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41231897 caaagggacccgtctatgttgtagattattgaagaatctagctgaaattaccaggcatgtaactatgaaaat 41231826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 44940453 - 44940403
Alignment:
Q  139 tcccgcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  44940453 tcccgcaggatactgaatcagatgtttggctttggcggcccaacattggtg 44940403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 17931246 - 17931212
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    ||||||||||||||||||||||||||||| |||||    
T  17931246 gtggtgtgtatcaaatgctcatgcggcaggagatg 17931212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 4164258 - 4164212
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  4164258 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 4164212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 34206549 - 34206503
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  34206549 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 34206503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 45459633 - 45459555
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    |||||| ||||||  ||| || ||||||||||| || |||||||||| |||| |||||||||||||||||||| |||||    
T  45459633 gcaggaaactgaaccagaagtctggctttggcgacctaatattggtgatgtggatcaaatgctcatgcggcaggagatg 45459555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 34206487 - 34206453
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    ||||||||||||||||||||||||||||| |||||    
T  34206487 gtggtgtgtatcaaatgctcatgcggcaggagatg 34206453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 4164196 - 4164168
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcag 215  Q
    |||||||||||||||||||||||||||||    
T  4164196 gtggtgtgtatcaaatgctcatgcggcag 4164168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 38947798 - 38947844
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  38947798 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 38947844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 53679034 - 53679080
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  53679034 gcaggatactgaatcagatgtctggctttggcggcccaacattggtg 53679080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 38947860 - 38947894
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    ||||||||||||||||||||||||||||| |||||    
T  38947860 gtggtgtgtatcaaatgctcatgcggcaggagatg 38947894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 19837292 - 19837264
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcag 215  Q
    |||||||||||||||||||||||||||||    
T  19837292 gtggtgtgtatcaaatgctcatgcggcag 19837264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 16896496 - 16896542
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  16896496 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 16896542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 11584281 - 11584243
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaa 181  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11584281 gcaggatactgaattagatgtttggctttggcggcccaa 11584243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 19233284 - 19233238
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  19233284 gcaggatactgaatcagatgtctggctttggcggcccaacattggtg 19233238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 19233222 - 19233188
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    ||||||||||||||||||||||||||||| |||||    
T  19233222 gtggtgtgtatcaaatgctcatgcggcaggagatg 19233188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 16896558 - 16896591
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagat 220  Q
    ||||||||||||||||||||||||||||| ||||    
T  16896558 gtggtgtgtatcaaatgctcatgcggcaggagat 16896591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 1308588 - 1308634
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||    
T  1308588 gcaggatactgaatcagatgtttgactttggcggcccaacattggtg 1308634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 26711451 - 26711408
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattg 186  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||    
T  26711451 gcaggatactgaattagatgtctggctttggcggcccaacattg 26711408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 16467576 - 16467542
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    ||||||||||||||||||||||||||||| |||||    
T  16467576 gtggtgtgtatcaaatgctcatgcggcaggagatg 16467542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 41691681 - 41691727
Alignment:
Q  143 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 189  Q
    |||||||||| ||| |||||||||||||||||| || ||||||||||    
T  41691681 gcaggatactcaatcagatgtttggctttggcgacctaatattggtg 41691727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 2681898 - 2681864
Alignment:
Q  187 gtggtgtgtatcaaatgctcatgcggcagaagatg 221  Q
    ||||||||||||||||||||||||||||| |||||    
T  2681898 gtggtgtgtatcaaatgctcatgcggcaggagatg 2681864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University