View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_90 (Length: 231)
Name: NF3547_high_90
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_90 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 15137217 - 15137403
Alignment:
| Q |
18 |
agatttagatggagagctttagaccacaaaccttagcaccaaaacattttcagccacaaactcataataaagcatctttctcttgtcttctgtttttctt |
117 |
Q |
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| T |
15137217 |
agatttagatggagaactttagaccacaaaccttagcaccaaaacattttcagccacaaactcataataaagcatctttctcttgtcttctgtttttctt |
15137316 |
T |
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| Q |
118 |
acaagtgtccattgcttcttaactcttcttacggttttctaatatatttcattattttatttctaacaaagcatttgctatagccgc |
204 |
Q |
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| T |
15137317 |
acaagtgtccattgcttcttaactcttcttacggttttctattatatttcattattttatttctaacaaagcatttgctatagccgc |
15137403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 15135536 - 15135600
Alignment:
| Q |
18 |
agatttagatggagagctttagaccacaaac--cttagcaccaaaacattttcagccacaaactc |
80 |
Q |
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| T |
15135536 |
agatttagatggtgagctttagatcacaaaaatctttgcaccaaaacattttcagccacaaactc |
15135600 |
T |
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