View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_high_96 (Length: 201)
Name: NF3547_high_96
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_high_96 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 4e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 27246542 - 27246378
Alignment:
| Q |
19 |
ggcgtagattaattctgctgaaggacaccaactgtaataattattattacgatggtagaaggagaagaaggaacggtaaccaccagggaaagtggagatg |
118 |
Q |
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| T |
27246542 |
ggcgtagattaattctgctgaaggacaccaactgtaataattattattacgatggtagaaggagaagaaggaatggtaaccaccagggaaagtggagatg |
27246443 |
T |
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| Q |
119 |
acgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgccataa |
183 |
Q |
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| T |
27246442 |
acgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgccataa |
27246378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 27253316 - 27253159
Alignment:
| Q |
25 |
gattaattctgctgaaggacaccaactgtaataattattattacgatggtagaaggagaagaaggaacggtaaccaccagggaaagtggagatgacgttg |
124 |
Q |
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| T |
27253316 |
gattaattctgcaaaaagataccaagagtaagaattattattgtgatggttgaaggagaagaaggaacggtaaccaccgggaaaagtggagatgacgttg |
27253217 |
T |
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| Q |
125 |
ttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgccata |
182 |
Q |
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| T |
27253216 |
ttagctatgggatccaatagcaaagaaggccatgttgaagtgcatatgttccgccata |
27253159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 27257554 - 27257452
Alignment:
| Q |
80 |
gagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgcc |
179 |
Q |
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| T |
27257554 |
gagaagaaggaacggtaacctccagggaaagtagagataacgttgtgaacgataggatccaacagcaaagaaggccacgttgaggtgcatatgttccgcc |
27257455 |
T |
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| Q |
180 |
ata |
182 |
Q |
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||| |
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| T |
27257454 |
ata |
27257452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 27240953 - 27240850
Alignment:
| Q |
79 |
ggagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgc |
178 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| | | || |||||| || ||||||||||| |||||||||||||||||||| |
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| T |
27240953 |
ggagaaaaaggaacggtaaccaccagggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttgaggtgcatatgttccgc |
27240854 |
T |
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| Q |
179 |
cata |
182 |
Q |
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|||| |
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| T |
27240853 |
cata |
27240850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 7500585 - 7500619
Alignment:
| Q |
79 |
ggagaagaaggaacggtaaccaccagggaaagtgg |
113 |
Q |
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| T |
7500585 |
ggagaagaaggaacggtaaccaccagggaaagtgg |
7500619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 7502018 - 7502059
Alignment:
| Q |
79 |
ggagaagaaggaacggtaaccaccagggaaagtggagatgac |
120 |
Q |
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| T |
7502018 |
ggagaagaatgaactgtaaccaccggggaaagtggagatgac |
7502059 |
T |
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