View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_11 (Length: 503)
Name: NF3547_low_11
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 67 - 503
Target Start/End: Original strand, 19345405 - 19345846
Alignment:
| Q |
67 |
cgatagtgatttcttcatcataattcagaaatgtaaatggttggaaagaaatcttactgggaaaaatacgagtccaagaaattgaaaacctataagcatc |
166 |
Q |
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| T |
19345405 |
cgatagtgatttcttcatcataattcagaaatgtaaatggttggaaagaaatcttactgggaaaaatacgagtccaagaaatagaaaacctataagcatc |
19345504 |
T |
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| Q |
167 |
cattcccatgtccttcataagttgtatgtctccctacatgcnnnnnnn-taatcacaattgaaaataccttccagaaattgtttaaatatgaatttcttt |
265 |
Q |
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| T |
19345505 |
cattcccatgtccttcataagttgtatgtctccctacatgcaaaaaaaataatcacaattgaaaataccttccagaaattggttaaatatgaatttcttt |
19345604 |
T |
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| Q |
266 |
tcatgaccatttatcactata----aaaatagctatatatactaattgtctagttagctacacttagaagaagtgattgaggttaaatctagtaaatttt |
361 |
Q |
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| T |
19345605 |
tcatgaccatttatcactatatataaaaatagctatatatactaattgtctagttagctacacttagaagaagtgattgaggttaaatctagtaaatttt |
19345704 |
T |
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| Q |
362 |
agttgattagttaatttgcacaaagaacaattgcatgattatttagctatcaactaaacttatataattacttcatatcgatgatactgatccactgcaa |
461 |
Q |
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| T |
19345705 |
agttgattagttaatttgcacaaagaacaattgcatgattatttagctatcaactaaacttatataattacttcatatcgatgatactgatccactgcaa |
19345804 |
T |
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| Q |
462 |
catcagaattgttgttaccatgtattttgcctgccataaaat |
503 |
Q |
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| T |
19345805 |
catcagaattgttgttaccatgtattttgcctgccacaaaat |
19345846 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 32278180 - 32278258
Alignment:
| Q |
119 |
cttactgggaaaaatacgagtccaagaaattgaaaacctataagcatccattcccatgtccttcataagttgtatgtct |
197 |
Q |
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| T |
32278180 |
cttactgggataaattcgagaccaagagatggaaaatctataggcatccatccccaagtccttcatgagttgtatgtct |
32278258 |
T |
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