View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_12 (Length: 502)
Name: NF3547_low_12
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 353 - 494
Target Start/End: Original strand, 4343042 - 4343183
Alignment:
| Q |
353 |
ggtgttgtaagaaaagttttcttggctattaagttttgttatggattttgtgatgtgatgttgttgatttttgttcaataatgatcaatgttatataagg |
452 |
Q |
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| T |
4343042 |
ggtgttgtaagaaaagttttcttggctattaagttttgttatggattttgtgatgtgatgttgttgatttttgttcaataatgatcaatgttatataagg |
4343141 |
T |
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| Q |
453 |
tgatgttttgtttttggatgaattttggattgatctgatgat |
494 |
Q |
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| T |
4343142 |
tgatgttttgtttttggatgaattttggattgatcttatgat |
4343183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 4342753 - 4342842
Alignment:
| Q |
60 |
aatcttttcattattttcaacaaaaataatcatctgggttgttgttattttttcataaatgctcataaatgcaaatgggtttgttgaaaa |
149 |
Q |
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| T |
4342753 |
aatcttttcattattttcaacaaaaataatcatctgggttgttgttattttttcataaatgctcataaatgcaaatgggtttgttgaaaa |
4342842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 17339060 - 17339105
Alignment:
| Q |
61 |
atcttttcattattttcaacaaaaataatcatctgggttgttgtta |
106 |
Q |
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| T |
17339060 |
atcttttcatcattttcaaccaaaatcatcatctgggttgttgtta |
17339105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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