View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_13 (Length: 492)
Name: NF3547_low_13
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 482
Target Start/End: Complemental strand, 51809146 - 51808691
Alignment:
| Q |
20 |
gtaagcatgcattcctcttttatttaacttggtttagtatcctttctgtatgctaaagaatctcgacgaatcaaatgttttgtgctaaacgtagaaacac |
119 |
Q |
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| T |
51809146 |
gtaagcatgcattcctcttttatttaacttggtttagtatcctttctgtatgctaaagaatctcgacgaatcaaatgttttgtgctaaacgtagaaacac |
51809047 |
T |
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| Q |
120 |
gattaaattaatagttcattcacagttattatacccacaccacagtgtcttgcctctgcattgtttgaaagtagtcacatattatatatggtctctggag |
219 |
Q |
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| T |
51809046 |
gattaaattaatagttcattcacaattattatacccacac-----tgtcttgcctctgcattgtttgaaagtagtcacatattatatatggtctctggag |
51808952 |
T |
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| Q |
220 |
agtgataaatggaaaaattgtatctttttcctcttgcaccatgactatcctatcctatattgacaaattttat-nnnnnnnnttgaacggttttaatacc |
318 |
Q |
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| T |
51808951 |
agtgataaatggaaaaattgtatctttttcctcttgcaccatgactatcctatcctatatagacaaattttataaaaaaaaattgaacggttttaatacc |
51808852 |
T |
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| Q |
319 |
atttcaaagttcttgaaagcatgcacataataagccgcaagtaacagcctgaaacttaaacttcttctaatagttttttctatctttctatttacattgc |
418 |
Q |
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| T |
51808851 |
atttcaaagttcttgaaagcatgcacataataagccgcaagtaacagcctgaaactaaaa---cttctaatagttttttctatctttctatttacattgc |
51808755 |
T |
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| Q |
419 |
tttccatcttcttttctaccataaaaataatctcccttcattgacctcaaaatagacctctctg |
482 |
Q |
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| T |
51808754 |
tttccatcttcttttctaccataacaataatctcccttcattcacctcaaaatagacctctctg |
51808691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 51804852 - 51804794
Alignment:
| Q |
401 |
tctttctatttacattgctttccatcttcttttctaccataaaaataatctcccttcatt |
460 |
Q |
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| T |
51804852 |
tctttctatttacttttctttccatcct-ttttcaaccataacaataatctcccttcatt |
51804794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 51773259 - 51773201
Alignment:
| Q |
401 |
tctttctatttacattgctttccatcttcttttctaccataaaaataatctcccttcat |
459 |
Q |
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| T |
51773259 |
tctttctatttacttctccttccatcttgttttctaccataaaaataacctcctttcat |
51773201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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