View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_18 (Length: 470)
Name: NF3547_low_18
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 3453834 - 3453395
Alignment:
| Q |
18 |
agtgtgtgaaaggaagatcatggagatgtgttcttttccaaaacatgatttaccgatcgtgatcaatatgttatgccgcacataatcggtttttgtgtga |
117 |
Q |
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| T |
3453834 |
agtgtgtgaaaggaagatcatggagatgtgttcttttccaaaacatgatttaccgatcgtgatcaatatgttatgccgcacataatctgtttttgtgtga |
3453735 |
T |
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| Q |
118 |
tgcaatgtattagatcatatatattttaagagaccacaaaattcattatgccaaccatttgtgggtttgcacgataaagtgagtcgtgcactttagcatt |
217 |
Q |
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| T |
3453734 |
tgcaatgtattagatcatatatattttaagagaccacaaaattcattatgccaaccatttgtgggtttgcacgataaagtgagtcgtgcactttagcatt |
3453635 |
T |
|
| Q |
218 |
attcttgactccaaacatgatttttacttaaaaattaataaacatgagaaaagaaacaataaatttatacgaagagcgatatttattatttagctagtac |
317 |
Q |
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| T |
3453634 |
attcttgactccaaacatgatttttacttaaaaattaataaacacgagaaaagaaacaataaatttatacgaagagcgatatttattatttagttagtac |
3453535 |
T |
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| Q |
318 |
cttcacttcaacctcgagtgtcgaaggatttcacaagtaaacaagtattctaacctctttgtacattgacatgattttgcaccgatagaactatttgcct |
417 |
Q |
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| T |
3453534 |
cttcacttcaacctcgagtgtcgaaggatttcacaagtaaacaagtattctaacctctttgtacattgacatgattttgcaccgatagaactatttgcct |
3453435 |
T |
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| Q |
418 |
tgaagatggaatttttcattagacacatattctaacctct |
457 |
Q |
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| T |
3453434 |
tgaagatggaatttttcattagacacatattctaacctct |
3453395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 3454281 - 3454349
Alignment:
| Q |
157 |
aattcattatgccaaccatttgtg-ggtttgcacgataaagtgagtcgtgcactttagcattattcttg |
224 |
Q |
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|||||||||||||| ||||| ||| ||||||||||| | | ||||||||||||| |||||||| ||||| |
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| T |
3454281 |
aattcattatgccagccattcgtgcggtttgcacgacatattgagtcgtgcactatagcattactcttg |
3454349 |
T |
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