View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_low_19 (Length: 462)
Name: NF3547_low_19
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_19 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 7739748 - 7739289
Alignment:
| Q |
1 |
agactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |
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| T |
7739748 |
agactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacg |
7739649 |
T |
|
| Q |
101 |
ctaccagcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactcc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
7739648 |
ctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggccaattcctaactctttcagcaaactcc |
7739549 |
T |
|
| Q |
201 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7739548 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtctaa |
7739449 |
T |
|
| Q |
301 |
caataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
7739448 |
caataagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctact |
7739349 |
T |
|
| Q |
401 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
460 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
7739348 |
ggattgagcaaatttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7739289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 7727430 - 7726971
Alignment:
| Q |
1 |
agactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| | |
|
|
| T |
7727430 |
agactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacg |
7727331 |
T |
|
| Q |
101 |
ctaccagcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactcc |
200 |
Q |
| |
|
|| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || || || ||||||||||||| ||||||| |
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|
| T |
7727330 |
cttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccggaccaatccctaactctttcagcaaactca |
7727231 |
T |
|
| Q |
201 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
7727230 |
aaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaa |
7727131 |
T |
|
| Q |
301 |
caataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctact |
400 |
Q |
| |
|
||| ||||| ||||||||||||| ||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7727130 |
caaccagttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctact |
7727031 |
T |
|
| Q |
401 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7727030 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7726971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 7731590 - 7731131
Alignment:
| Q |
1 |
agactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
7731590 |
agactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacg |
7731491 |
T |
|
| Q |
101 |
ctaccagcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactcc |
200 |
Q |
| |
|
|| |||| || ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||| | ||||||| |
|
|
| T |
7731490 |
cttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactca |
7731391 |
T |
|
| Q |
201 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7731390 |
aaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaa |
7731291 |
T |
|
| Q |
301 |
caataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctact |
400 |
Q |
| |
|
||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||| |
|
|
| T |
7731290 |
caaccagttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctact |
7731191 |
T |
|
| Q |
401 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
460 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7731190 |
ggattgagcaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7731131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 14 - 460
Target Start/End: Complemental strand, 7699555 - 7699109
Alignment:
| Q |
14 |
gactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggact |
113 |
Q |
| |
|
||||||||||||||||| || |||| ||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| | |
|
|
| T |
7699555 |
gactggagcttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagt |
7699456 |
T |
|
| Q |
114 |
ttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaa |
213 |
Q |
| |
|
||||| |||| || ||||||| | | |||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
7699455 |
ttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaagactacaaaa |
7699356 |
T |
|
| Q |
214 |
actcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaacc |
313 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| | |||||| | || |||||| | |||||| || || ||||| |||||||||||||||| |||||| || |
|
|
| T |
7699355 |
tctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatcc |
7699256 |
T |
|
| Q |
314 |
ggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagt |
413 |
Q |
| |
|
|| ||||||||||||| ||||| ||||| |||||||| |||||||| || ||||||||||| || |||||||| || ||| |||||||||| |||| |
|
|
| T |
7699255 |
ggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggttgaagaagt |
7699156 |
T |
|
| Q |
414 |
ttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
460 |
Q |
| |
|
|| |||| | |||||| |||||||||||||| |||| ||||||| |
|
|
| T |
7699155 |
ttaacaagaatgtgtttgagcataataaatgcctttgtggtgctcct |
7699109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 47 - 460
Target Start/End: Complemental strand, 7713867 - 7713454
Alignment:
| Q |
47 |
cctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctctcat |
146 |
Q |
| |
|
||||||||| |||||| ||||| ||| |||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||| | | ||||||| |
|
|
| T |
7713867 |
cctggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcat |
7713768 |
T |
|
| Q |
147 |
tggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtc |
246 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||| ||||||| |||||||| |||| ||||||||||| |||||||| ||||||||| | |
|
|
| T |
7713767 |
tggccgaaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtgggcc |
7713668 |
T |
|
| Q |
247 |
gatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccg |
346 |
Q |
| |
|
||||| || || ||| | |||||| || | || ||| |||||||||| ||||| |||||| |||||| |||||||||||| ||| | ||||| | |
|
|
| T |
7713667 |
aatccctgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacag |
7713568 |
T |
|
| Q |
347 |
tctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcc |
446 |
Q |
| |
|
|||||||| ||||| || || ||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7713567 |
tctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcc |
7713468 |
T |
|
| Q |
447 |
tctgtgctgctcct |
460 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
7713467 |
tttgtgatgctcct |
7713454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 165 - 452
Target Start/End: Original strand, 12908070 - 12908357
Alignment:
| Q |
165 |
taactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctagg |
264 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||| ||| | | | || ||| | ||| ||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaaaattgcgaagcctcaaacttaactccaacaaccttagtggcccgatccccaccttcctagg |
12908169 |
T |
|
| Q |
265 |
ccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaac |
364 |
Q |
| |
|
|| |||||| ||||| | ||| |||||||||||||||| |||||| ||||||||||||| ||||| ||| | ||||||||||||| |||||||| || |
|
|
| T |
12908170 |
ccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaat |
12908269 |
T |
|
| Q |
365 |
gtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtg |
452 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||||||||||| |||| |
|
|
| T |
12908270 |
gttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtatgtttgagcataataaatgcctttgtg |
12908357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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