View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_low_2 (Length: 836)

Name: NF3547_low_2
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_low_2
NF3547_low_2
[»] chr1 (20 HSPs)
chr1 (4-483)||(47478964-47479436)
chr1 (570-817)||(47479491-47479738)
chr1 (444-493)||(28120142-28120191)
chr1 (444-483)||(16176403-16176442)
chr1 (445-489)||(11336127-11336171)
chr1 (445-489)||(11494146-11494190)
chr1 (444-483)||(1060375-1060414)
chr1 (444-483)||(8318814-8318853)
chr1 (444-483)||(36258841-36258880)
chr1 (444-489)||(49291907-49291953)
chr1 (376-425)||(24059893-24059942)
chr1 (444-483)||(18340912-18340951)
chr1 (447-482)||(33299770-33299805)
chr1 (444-483)||(45563623-45563662)
chr1 (444-479)||(47684982-47685017)
chr1 (451-493)||(2379292-2379334)
chr1 (594-656)||(47480318-47480380)
chr1 (444-481)||(9171933-9171970)
chr1 (444-481)||(9179915-9179952)
chr1 (444-493)||(24059832-24059881)
[»] chr3 (13 HSPs)
chr3 (444-493)||(39555186-39555235)
chr3 (445-483)||(11150148-11150186)
chr3 (444-492)||(12830461-12830509)
chr3 (444-483)||(23605845-23605884)
chr3 (444-483)||(28405114-28405153)
chr3 (444-494)||(32959070-32959120)
chr3 (452-493)||(49864752-49864793)
chr3 (245-276)||(6085977-6086008)
chr3 (444-483)||(36841482-36841521)
chr3 (444-479)||(46250199-46250234)
chr3 (242-277)||(49864948-49864983)
chr3 (444-475)||(51380424-51380455)
chr3 (444-483)||(53102689-53102728)
[»] chr2 (8 HSPs)
chr2 (444-489)||(11476327-11476372)
chr2 (444-489)||(21501581-21501626)
chr2 (444-483)||(27577776-27577815)
chr2 (444-483)||(31510178-31510217)
chr2 (444-481)||(973364-973401)
chr2 (445-479)||(29945252-29945286)
chr2 (445-483)||(33259997-33260035)
chr2 (444-477)||(6128118-6128151)
[»] chr8 (13 HSPs)
chr8 (445-489)||(7672116-7672160)
chr8 (444-483)||(10011289-10011328)
chr8 (444-493)||(42985830-42985879)
chr8 (444-483)||(36396825-36396864)
chr8 (445-483)||(43141107-43141145)
chr8 (444-483)||(6148065-6148104)
chr8 (444-483)||(13343654-13343693)
chr8 (444-483)||(29292762-29292801)
chr8 (444-483)||(40923339-40923378)
chr8 (445-483)||(12178253-12178291)
chr8 (445-483)||(12422681-12422719)
chr8 (455-489)||(40423280-40423314)
chr8 (444-493)||(35656236-35656285)
[»] chr7 (9 HSPs)
chr7 (444-483)||(23261199-23261238)
chr7 (444-483)||(38603828-38603867)
chr7 (444-483)||(41161235-41161274)
chr7 (444-478)||(17040398-17040432)
chr7 (444-481)||(43212819-43212856)
chr7 (445-481)||(37087691-37087727)
chr7 (447-483)||(44416086-44416122)
chr7 (444-483)||(48177073-48177112)
chr7 (444-481)||(32228285-32228322)
[»] chr5 (13 HSPs)
chr5 (444-483)||(29930671-29930710)
chr5 (444-483)||(37523339-37523378)
chr5 (444-483)||(37563511-37563550)
chr5 (445-483)||(36175775-36175813)
chr5 (445-483)||(37688081-37688119)
chr5 (445-493)||(1761666-1761714)
chr5 (444-483)||(19459603-19459642)
chr5 (444-482)||(5271997-5272035)
chr5 (444-477)||(19131277-19131310)
chr5 (445-493)||(16159398-16159446)
chr5 (446-476)||(14023210-14023240)
chr5 (242-276)||(32125357-32125391)
chr5 (444-493)||(4576703-4576752)
[»] chr4 (16 HSPs)
chr4 (444-483)||(21294965-21295004)
chr4 (444-483)||(42890409-42890448)
chr4 (445-483)||(22523485-22523523)
chr4 (444-481)||(5651839-5651876)
chr4 (444-489)||(7784207-7784252)
chr4 (444-481)||(9392664-9392701)
chr4 (444-493)||(30106248-30106297)
chr4 (444-480)||(16590293-16590329)
chr4 (453-489)||(33634770-33634806)
chr4 (444-487)||(19411048-19411091)
chr4 (448-483)||(21757631-21757666)
chr4 (444-483)||(43904703-43904742)
chr4 (447-493)||(32675187-32675232)
chr4 (444-494)||(38160950-38161000)
chr4 (242-276)||(42000888-42000922)
chr4 (445-483)||(53456207-53456245)
[»] scaffold0571 (1 HSPs)
scaffold0571 (444-483)||(9261-9300)
[»] scaffold0025 (1 HSPs)
scaffold0025 (444-476)||(66663-66695)
[»] scaffold0004 (1 HSPs)
scaffold0004 (454-483)||(337292-337321)
[»] chr6 (1 HSPs)
chr6 (446-483)||(3546061-3546098)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-145; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 4 - 483
Target Start/End: Original strand, 47478964 - 47479436
Alignment:
Q  4 atgtcgaagaatatgatgataattattcaaggaggtaagtgacaaacaagtactatatcattaatttcatagtttattactttatttccagaatatttgc 103  Q
    ||||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47478964 atgtccaaaaatatggagataattattcaaggaggtaagtgacaaacaagtactatatcattaatgtcatagtttattactttatttccagaatatttgc 47479063  T
Q  104 tcacattatggactgctttgttgttatctatggcatgattttacttggatatatgttatgttgataggtcaccgtctctcttctcctaaataattttatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47479064 tc-cattatggactgctttgttgttatctatggcatgattttacttggatatatgttatgttgataggtcaccgtctctcttctcctaaataattttatg 47479162  T
Q  204 ggtgcaattattttagcttt-nnnnnnnnnnnnnttctcttagaaaaatctagagattttattttagagatttttnnnnnnngtccaaagttatttgcgt 302  Q
    ||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||    
T  47479163 ggtgcaattattttagctttaaaaaaaataaattttctcttagaaaaatctagagattttattttagagatttttaaaaaaagtccaaagctatttgcgt 47479262  T
Q  303 tcgtcaactacccaaaaaaagtgattttgttnnnnnnnnngatttttgactagttcatttgtttttnnnnnnntggattttgagggaaactaatcctaat 402  Q
    | ||||||||||||||||| |||||||||||         ||||||| ||||||||||||||||||       |||||||||||| ||||||||||||||    
T  47479263 ttgtcaactacccaaaaaatgtgattttgttaaaaaaaatgatttttaactagttcatttgttttttaaaaaatggattttgaggaaaactaatcctaat 47479362  T
Q  403 aatttttcattttagagtcaaaactcaaaatatannnnnnngataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||| |||||||||       ||||||||||       |||||||||||||||||||||||||||| |||||||||||    
T  47479363 aattttttattttagag-------tcaaaatatatttttttgataaaatgatttttctaaaaatcctaagcaaacacttaa 47479436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 570 - 817
Target Start/End: Original strand, 47479491 - 47479738
Alignment:
Q  570 ctcttaaacaaacgcaccttataaattcattttcatctattaatggttcttccaaattgtttgtctcaacacagatgaaaatacagttatagtcacctca 669  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47479491 ctcttaaacaaacgcaccttataaattcattttcatctattaagggttcttccaaattgtttgtctcaacacagatgaaaatacagttatagtcacctca 47479590  T
Q  670 tacacttctaatatattcctgttcttagcaatagaatcaatcttcattaccttcaaaaacatgatgtggagtactttcaaattattcatctactagattc 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47479591 tacacttctaatatattcctgttcttagcaatagaatcaatcttcattaccttcaaaaacatgatgcggagtactttcaaattattcatctactagattc 47479690  T
Q  770 tcactcttagcaatatgatcaatctttcattatcacgcttgctcatcg 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47479691 tcactcttagcaatatgatcaatctttcattatcacgcttgctcatcg 47479738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 28120142 - 28120191
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28120142 gataaaatgatttttctaaaaatcctaaacaaacacttaaaaataacaaa 28120191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 16176403 - 16176442
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16176403 gataaaatgatttttctaaaaatcctaaacaaacacttaa 16176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 11336171 - 11336127
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  11336171 ataaaacgatttttctaaaaatcctaaacaaacacttaaaaataa 11336127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 11494190 - 11494146
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  11494190 ataaaacgatttttctaaaaatcctaaacaaacacttaaaaataa 11494146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 1060375 - 1060414
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  1060375 gataaaatgatttttcaaaaaatcctaaacaaacacttaa 1060414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 8318814 - 8318853
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  8318814 gataaaatgatttttctacaaatcctaaacaaacacttaa 8318853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 36258880 - 36258841
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  36258880 gataaaatgatttttctaaaaatcataaacaaacacttaa 36258841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 489
Target Start/End: Complemental strand, 49291953 - 49291907
Alignment:
Q  444 gataaaatgatttttctaaaaa-tcctaaacaaacacttaagaataa 489  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||    
T  49291953 gataaaatgatttttctaaaaaatcctaaacaaacacttaaaaataa 49291907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 24059942 - 24059893
Alignment:
Q  376 tggattttgagggaaactaatcctaataatttttcattttagagtcaaaa 425  Q
    |||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  24059942 tggattttgagaaaaactaatcctaatagcttttcattttagagtcaaaa 24059893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 18340951 - 18340912
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  18340951 gataaaataatttttctaaaaatcctaaacatacacttaa 18340912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 482
Target Start/End: Original strand, 33299770 - 33299805
Alignment:
Q  447 aaaatgatttttctaaaaatcctaaacaaacactta 482  Q
    |||||||||||||||||| |||||||||||||||||    
T  33299770 aaaatgatttttctaaaagtcctaaacaaacactta 33299805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 45563662 - 45563623
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  45563662 gataaaatgatttttctaaaaattcaaaacaaacacttaa 45563623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 47684982 - 47685017
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacac 479  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47684982 gataaaatgatttttctaaaaatcccaaacaaacac 47685017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 2379292 - 2379334
Alignment:
Q  451 tgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||| |||||||||||||||||||||||| ||| |||||    
T  2379292 tgatttttataaaaatcctaaacaaacacttaaaaatgacaaa 2379334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 656
Target Start/End: Original strand, 47480318 - 47480380
Alignment:
Q  594 attcattttcatctattaatggttcttccaaattgtttgtctcaacacagatgaaaatacagt 656  Q
    ||||| ||||||||| |||| || ||||||| ||||||| || |||| |||||||||||||||    
T  47480318 attcaatttcatctactaattgtccttccaatttgtttgactaaacatagatgaaaatacagt 47480380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 9171933 - 9171970
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  9171933 gataaaatgatttttcttaaaattctaaacaaacactt 9171970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 9179915 - 9179952
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  9179915 gataaaatgatttttcttaaaattctaaacaaacactt 9179952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 24059881 - 24059832
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||||||||||| |||||| ||||| |||||||||| ||| |||||    
T  24059881 gataaaatgatttttcaaaaaattctaaataaacacttaaaaatgacaaa 24059832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 39555235 - 39555186
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  39555235 gataaaatgatttttctaaaaatcctaaacaaacacttaaaaatgacaaa 39555186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 11150148 - 11150186
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11150148 ataaaatgatttttctaaaaatcctaaacaaacacttaa 11150186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 492
Target Start/End: Complemental strand, 12830509 - 12830461
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaa 492  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  12830509 gataaaatgaattttctaaaaatcctaaacaaacacttaaaaatgacaa 12830461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 23605884 - 23605845
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  23605884 gataaaatgatttttctaaaaatcctaaacaaacccttaa 23605845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 28405114 - 28405153
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  28405114 gataaaatgatttttctaaaaaacctaaacaaacacttaa 28405153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 32959120 - 32959070
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaag 494  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||| ||||    
T  32959120 gataaaatgatttttctaaaaatcgtaaacagacacttaaaaataaaaaag 32959070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 49864793 - 49864752
Alignment:
Q  452 gatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  49864793 gatttttctaaaaatcctaaacaaacacttaaaaatgacaaa 49864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 276
Target Start/End: Complemental strand, 6086008 - 6085977
Alignment:
Q  245 gaaaaatctagagattttattttagagatttt 276  Q
    ||||||||||||||||||||||||||||||||    
T  6086008 gaaaaatctagagattttattttagagatttt 6085977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 36841482 - 36841521
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  36841482 gataaaatgatttttctaaaaatctcaaacaaacacttaa 36841521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 46250199 - 46250234
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacac 479  Q
    |||||||||||||||||||||||| |||||||||||    
T  46250199 gataaaatgatttttctaaaaatcataaacaaacac 46250234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 49864983 - 49864948
Alignment:
Q  242 ttagaaaaatctagagattttattttagagattttt 277  Q
    ||||||||||||||||||||| ||||||||||||||    
T  49864983 ttagaaaaatctagagatttttttttagagattttt 49864948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 475
Target Start/End: Original strand, 51380424 - 51380455
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaa 475  Q
    ||||||||||||||||||||||||||||||||    
T  51380424 gataaaatgatttttctaaaaatcctaaacaa 51380455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 53102728 - 53102689
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  53102728 gataaaatgatttttctaaaaatcctatacaaacagttaa 53102689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 11476327 - 11476372
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  11476327 gataaaatgatttttctaaaaatcctaaacaaacacttaaaaataa 11476372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 21501581 - 21501626
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  21501581 gataaaatgatttttctaaaaatcctaaacaaacacttaaaaataa 21501626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 27577815 - 27577776
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27577815 gataaaatgatttttctaaaaatcctaaacaaacacttaa 27577776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 31510217 - 31510178
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31510217 gataaaatgatttttctaaaaatcctaaacaaacacttaa 31510178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 444 - 481
Target Start/End: Complemental strand, 973401 - 973364
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||||||||||||||||||||||||||||||    
T  973401 gataaaatgatttttctaaaaatcctaaacaaacactt 973364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 479
Target Start/End: Complemental strand, 29945286 - 29945252
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacac 479  Q
    ||||||| |||||||||||||||||||||||||||    
T  29945286 ataaaattatttttctaaaaatcctaaacaaacac 29945252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 33259997 - 33260035
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  33259997 ataaaatgattttttttaaaatcctaaacaaacacttaa 33260035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 477
Target Start/End: Complemental strand, 6128151 - 6128118
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaac 477  Q
    ||||||||||||| ||||||||||||||||||||    
T  6128151 gataaaatgatttctctaaaaatcctaaacaaac 6128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 7672116 - 7672160
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  7672116 ataaaatgatttttctaaaaatcctaaacaaacacttaaaaataa 7672160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 10011289 - 10011328
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10011289 gataaaatgatttttctaaaaatcctaaacaaacacttaa 10011328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 42985830 - 42985879
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||| |||||| |||||||||||||||||||||||| |||||||||    
T  42985830 gataaaataatttttttaaaaatcctaaacaaacacttaaaaataacaaa 42985879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 36396825 - 36396864
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  36396825 gataaaatgatttttctaaaaatcctaaacaagcacttaa 36396864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 483
Target Start/End: Complemental strand, 43141145 - 43141107
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  43141145 ataaaatgatttttctaaaaattctaaacaaacacttaa 43141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 6148065 - 6148104
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  6148065 gataaaataatttttctaaaaatcctaatcaaacacttaa 6148104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 13343654 - 13343693
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  13343654 gataaattaatttttctaaaaatcctaaacaaacacttaa 13343693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 29292801 - 29292762
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  29292801 gataaaataatttttcaaaaaatcctaaacaaacacttaa 29292762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 40923378 - 40923339
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  40923378 gataaaatgatttctcttaaaatcctaaacaaacacttaa 40923339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 12178253 - 12178291
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  12178253 ataaaataattttgctaaaaatcctaaacaaacacttaa 12178291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 12422681 - 12422719
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  12422681 ataaaataattttgctaaaaatcctaaacaaacacttaa 12422719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 40423314 - 40423280
Alignment:
Q  455 ttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    ||||||||||||||||||||||||||||| |||||    
T  40423314 ttttctaaaaatcctaaacaaacacttaaaaataa 40423280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 35656285 - 35656236
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    ||||| ||||||||||||||||||||||||| ||||| || ||| |||||    
T  35656285 gataatatgatttttctaaaaatcctaaacacacactaaaaaatgacaaa 35656236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 23261238 - 23261199
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23261238 gataaaatgatttttctaaaaatcctaaacaaacacttaa 23261199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 38603867 - 38603828
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38603867 gataaaatgatttttctaaaaatcctaaacaaacacttaa 38603828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 41161274 - 41161235
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41161274 gataaaatgatttttctaaaaatcctaaacaaacacttaa 41161235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 478
Target Start/End: Original strand, 17040398 - 17040432
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaaca 478  Q
    |||||||||||||||||||||||||||||||||||    
T  17040398 gataaaatgatttttctaaaaatcctaaacaaaca 17040432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 481
Target Start/End: Complemental strand, 43212856 - 43212819
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43212856 gataaaatgatttttctaaaaaacctaaacaaacactt 43212819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 37087727 - 37087691
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37087727 ataaaatgattttcctaaaaatcctaaacaaacactt 37087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 44416086 - 44416122
Alignment:
Q  447 aaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||| |||||||||    
T  44416086 aaaatgatttttctaaaaatcctaaactaacacttaa 44416122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 48177073 - 48177112
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  48177073 gataaaataatttttctaaaaatcctaaacaaatacttaa 48177112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 32228285 - 32228322
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  32228285 gataaaatgatttttttaaaaatcgtaaacaaacactt 32228322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 29930710 - 29930671
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29930710 gataaaatgatttttctaaaaatcctaaacaaacacttaa 29930671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 37523339 - 37523378
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37523339 gataaaatgatttttctaaaaatcctaaacaaacacttaa 37523378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 37563511 - 37563550
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37563511 gataaaatgatttttctaaaaatcctaaacaaacacttaa 37563550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 36175775 - 36175813
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36175775 ataaaatgatttttctaaaaatcctaaacaaacacttaa 36175813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 37688081 - 37688119
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37688081 ataaaatgatttttctaaaaatcctaaacaaacacttaa 37688119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 1761714 - 1761666
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  1761714 ataaaatgatttttataaaaatcctaaacaaacacttaaaaatgacaaa 1761666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 19459642 - 19459603
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  19459642 gataaaatgatttttctaaaaatcctaaacaaacatttaa 19459603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 5271997 - 5272035
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactta 482  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  5271997 gataaaataatttttctaaaaatcctaaacaaacactta 5272035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 477
Target Start/End: Complemental strand, 19131310 - 19131277
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaac 477  Q
    ||||||||||||||||||||||||||||||||||    
T  19131310 gataaaatgatttttctaaaaatcctaaacaaac 19131277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 16159398 - 16159446
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||| |||||    
T  16159398 ataaaatgatttttctataaatcttaaacaaacacttaaaaatgacaaa 16159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 446 - 476
Target Start/End: Original strand, 14023210 - 14023240
Alignment:
Q  446 taaaatgatttttctaaaaatcctaaacaaa 476  Q
    |||||||||||||||||||||||||||||||    
T  14023210 taaaatgatttttctaaaaatcctaaacaaa 14023240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 32125357 - 32125391
Alignment:
Q  242 ttagaaaaatctagagattttattttagagatttt 276  Q
    ||||||||||||||||||||| |||||||||||||    
T  32125357 ttagaaaaatctagagatttttttttagagatttt 32125391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 4576703 - 4576752
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||||| |||||| | |||||||||||||||||||||| ||| |||||    
T  4576703 gataaaataatttttttgaaaatcctaaacaaacacttaaaaatgacaaa 4576752  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 21295004 - 21294965
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21295004 gataaaatgatttttctaaaaatcctaaacaaacacttaa 21294965  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 42890409 - 42890448
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42890409 gataaaatgatttttctaaaaatcctaaacaaacacttaa 42890448  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 22523485 - 22523523
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22523485 ataaaatgatttttctaagaatcctaaacaaacacttaa 22523523  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 5651839 - 5651876
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5651839 gataaaatgatatttctaaaaatcctaaacaaacactt 5651876  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 7784207 - 7784252
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    |||| ||||||||||||||||||||||||||| ||||||| |||||    
T  7784207 gatataatgatttttctaaaaatcctaaacaagcacttaaaaataa 7784252  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 9392664 - 9392701
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacactt 481  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9392664 gataaaatgatttttctaaaaattctaaacaaacactt 9392701  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 30106248 - 30106297
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    |||||| |||||||||| |||||||||||||||||||||| ||| |||||    
T  30106248 gataaattgatttttctgaaaatcctaaacaaacacttaaaaatgacaaa 30106297  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 16590329 - 16590293
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacact 480  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16590329 gataaaatgatttttttaaaaatcctaaacaaacact 16590293  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 33634770 - 33634806
Alignment:
Q  453 atttttctaaaaatcctaaacaaacacttaagaataa 489  Q
    ||||||||||||||||||||||||||||||| |||||    
T  33634770 atttttctaaaaatcctaaacaaacacttaaaaataa 33634806  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 19411048 - 19411091
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaat 487  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||    
T  19411048 gatagaatgatttttctaaaaatcctaaataaacatttaagaat 19411091  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 21757631 - 21757666
Alignment:
Q  448 aaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21757631 aaatgatttttcttaaaatcctaaacaaacacttaa 21757666  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 43904703 - 43904742
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  43904703 gataaaatgatttttctaaaaattttaaacaaacacttaa 43904742  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 447 - 493
Target Start/End: Original strand, 32675187 - 32675232
Alignment:
Q  447 aaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaa 493  Q
    ||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  32675187 aaaatgatttttc-aaaaatcctaaacaaacacttaaaaatgacaaa 32675232  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 38161000 - 38160950
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaagaataacaaag 494  Q
    |||||||| |||||| |||||||||||||||||||| ||| ||| ||||||    
T  38161000 gataaaataatttttataaaaatcctaaacaaacacgtaaaaatgacaaag 38160950  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 42000888 - 42000922
Alignment:
Q  242 ttagaaaaatctagagattttattttagagatttt 276  Q
    ||||||||||||||||||||| |||||||||||||    
T  42000888 ttagaaaaatctagagatttttttttagagatttt 42000922  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 53456207 - 53456245
Alignment:
Q  445 ataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  53456207 ataaaatgatttttttaaaaatccttaacaaacacttaa 53456245  T

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Target: scaffold0571 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 9300 - 9261
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  9300 gataaaatgatttttctaaaaatcctatacaaacacttaa 9261  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 444 - 476
Target Start/End: Complemental strand, 66695 - 66663
Alignment:
Q  444 gataaaatgatttttctaaaaatcctaaacaaa 476  Q
    |||||||||||||||||||||||||||||||||    
T  66695 gataaaatgatttttctaaaaatcctaaacaaa 66663  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 483
Target Start/End: Complemental strand, 337321 - 337292
Alignment:
Q  454 tttttctaaaaatcctaaacaaacacttaa 483  Q
    ||||||||||||||||||||||||||||||    
T  337321 tttttctaaaaatcctaaacaaacacttaa 337292  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 3546061 - 3546098
Alignment:
Q  446 taaaatgatttttctaaaaatcctaaacaaacacttaa 483  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  3546061 taaaatgatttttcaaaaaatcctatacaaacacttaa 3546098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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