View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_22 (Length: 434)
Name: NF3547_low_22
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 2259527 - 2259112
Alignment:
| Q |
17 |
aggaaaaatatactaaccctttgtaatatgtaccagacatagtgacaacaccagcatcgttgctatccaaacgagtctgccaaattaaatcaccagttga |
116 |
Q |
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| T |
2259527 |
aggaaaaatatactaaccctttgtaatatgtaccagacatagtgacaacaccagcatcattgctatccaaacgagtctgccaaattaaatcaccagttga |
2259428 |
T |
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| Q |
117 |
tctattcacagcaataacaacagctggtccatatattcccacaatcacaagatcctcatcaactgctatagttggtgttgccctagccactgtccaatta |
216 |
Q |
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| T |
2259427 |
tctattcacagcaataacaacagctggtccatatattcccacaatcacaagatcctcatcaactgctatagttggtgttgccctagccactgtccaatta |
2259328 |
T |
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| Q |
217 |
acatttgcaataaaacctattgaatctagaccagttaattttgtcaaattctttttccaaacaagagttccatcaatttctctcactgcaaatattaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259327 |
acatttgcaataaaacctattgaatctagaccagttaattttgtcaaattctttttccaaacaagagttccatcaatttctctcactgcaaatattaaac |
2259228 |
T |
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| Q |
317 |
cattccatgaaggaaaatatattgttccattgaaaattgctggtgttgcagttatgtctttgcctgcattgaattcccacttcaaagttaagttgctaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259227 |
cattccatgaaggaaaatatattgttccattgaaaattgctggtgttgcagttatgtctttgcctgcattgaattcccacttcaaagttaagttgctaat |
2259128 |
T |
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| Q |
417 |
tgttttaaggttgatt |
432 |
Q |
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| T |
2259127 |
tgttttaaggttgatt |
2259112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 402
Target Start/End: Original strand, 2229825 - 2229956
Alignment:
| Q |
271 |
ttccaaacaagagttccatcaatttctctcactgcaaatattaaaccattccatgaaggaaaatatattgttccattgaaaattgctggtgttgcagtta |
370 |
Q |
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||||||||||| | ||||||||||| | | | |||| |||| ||||||||| | |||||||| ||||| |||||| | |||| ||||||||| || | |
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| T |
2229825 |
ttccaaacaagtgatccatcaatttgtttaattgcatatatgttaccattccagcatggaaaataaattgtaccattgtatattgttggtgttgctgtaa |
2229924 |
T |
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| Q |
371 |
tgtctttgcctgcattgaattcccacttcaaa |
402 |
Q |
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| T |
2229925 |
tatctttgcctgcattgaatttccacttcaaa |
2229956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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