View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_23 (Length: 422)
Name: NF3547_low_23
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 422
Target Start/End: Complemental strand, 31099080 - 31098660
Alignment:
| Q |
4 |
tggtgtaatgagatattccatgtgattttaagtatggttttaatttgaaatattcaatgccactgtcagtgtaaatggatttaatt-ctgcgcaaaatat |
102 |
Q |
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| T |
31099080 |
tggtgtagtgagatattccatgtgattttaagtatggttttaatttgaaatattcaatgccactgtcagtgtaaatggatttaatttctgcgcaaaatat |
31098981 |
T |
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| Q |
103 |
gttctaacttttgtgaaaagttgggggaaatgtaagaagcatcaattttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacac |
202 |
Q |
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| T |
31098980 |
gttctaacttttgtgaaaagttgggggaaatggaagaagcgtcaattttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacac |
31098881 |
T |
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| Q |
203 |
aagataatatttgtatccactgatagtgttaattggagagggtctccaaacatcaga-aaaatgagttcaagaggacaactagtttttatggacatacgg |
301 |
Q |
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| T |
31098880 |
aagataatatttgtatccactgatagtgttaattggagagggtctccaaacatcagaaaaaatgagttcaagaggacaactagtttttatggacatacag |
31098781 |
T |
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| Q |
302 |
aaaatagaagttcatgnnnnnnnnaatatgacacattacagagtttttattatcaaaatttgttgagagacaacattcgagtgagaattttttaggagaa |
401 |
Q |
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| T |
31098780 |
aaaacagaagttcatgttttttttaatatgacacattacagagtttttattatcaaaatttgttgagagacaacattcgagtgagaattttttaggagaa |
31098681 |
T |
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| Q |
402 |
atgactgaaatgagcatgcca |
422 |
Q |
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| T |
31098680 |
atgactgaaatgagcatgcca |
31098660 |
T |
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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 1701955 - 1701880
Alignment:
| Q |
142 |
catcaattttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgta |
217 |
Q |
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| T |
1701955 |
catcagttttactttttaacggataaatccaagaatatcgagtaaaatgatcaacaaacacaagataatatttgta |
1701880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 294
Target Start/End: Original strand, 26592503 - 26592636
Alignment:
| Q |
162 |
ggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgtatccactgatag-tgttaattggagagggtctccaaacatcaga- |
259 |
Q |
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|||||||||||| ||||||||||||| || ||||| ||||||||||| ||| | || ||| | || | |||| || || || |||| |||||||||||| |
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| T |
26592503 |
ggataaatccatgtatatctagtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgtt-ataggggatggtccccaaacatcagag |
26592601 |
T |
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| Q |
260 |
aaaatgagttcaagaggacaactagtttttatgga |
294 |
Q |
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| T |
26592602 |
aaaataagttctagaggagaattagtttttatgga |
26592636 |
T |
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