View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_26 (Length: 407)
Name: NF3547_low_26
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 1718740 - 1718440
Alignment:
| Q |
17 |
acattcatgaagtgtttggaactttgcattgcagaatcctcttttatcatcatcggagaaatttgacgttactacgaaaatatcattttgagcatgcaca |
116 |
Q |
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| T |
1718740 |
acattcatgaagtgtttggaacattgcattgcagaatcctcttttatcatcatcggagaaatttgacgttaatacgaaaatatcattttgagcatgcaca |
1718641 |
T |
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| Q |
117 |
tcagaacaaaacaaaggcctaaattgacatatggcgacttgctcaatgcaatatactctgcaactgatcgagctaaagcaggaaagcttgaaatgaaaag |
216 |
Q |
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| T |
1718640 |
tcagaacaaaacaaaggcctaaattgacatatggcgacttgctcaatgcaatttactctgcaaccgatcgagctaaagcaggaaagcttgaaatgaaaag |
1718541 |
T |
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| Q |
217 |
ccaaaagctttctagggacacttcggagcaccatcggactatatattacatcagttatacaaagttcttct-aatataattttattaacacagacactgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1718540 |
ccaaaagctttctagggacacttcggagcaccatcggactatatattacatcagttatacaaagttcttctaaatataattttattaacacagacactgt |
1718441 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
1718440 |
t |
1718440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 1718426 - 1718375
Alignment:
| Q |
344 |
acaccataccttacataaagtttgatatccattcaaagtttggtctgttctg |
395 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1718426 |
acaccataccttacatgaagtttgatatccattcaaagtttggtctgttctg |
1718375 |
T |
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