View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_27 (Length: 402)
Name: NF3547_low_27
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 13773628 - 13773942
Alignment:
| Q |
2 |
atgagcacactttcgggtcctaactcctaagtcaataccatcgaacaaaccaagtgggctaagctttgccatatgtaattgttttgttaaaagaattgtt |
101 |
Q |
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| T |
13773628 |
atgagcacactctcgggtccaaactcttgagtcaataccatcggaccaaccaagtgggctaagctttgccatatgtaattgttttgttacaagaattgtt |
13773727 |
T |
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| Q |
102 |
ttctttacgatgaaaagattt-----atctcgtacaaaattgtacgcataattaagcaaaataatagaaaatataagtgtgaaannnnnnnatgagccac |
196 |
Q |
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| T |
13773728 |
ttctttacgatgaaaagatattaaagatctcgtacaaaattgtacacataattaagcaaaataatagaaaataaaagtgtgaaatttttttatgagccac |
13773827 |
T |
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| Q |
197 |
cattatagtgaaatacttcgattgatagatgaattaaatagatgtttcatgctaaactacaattagcattagtagagtaactagtaataaaaatttaagc |
296 |
Q |
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| T |
13773828 |
cattatagtgaaatacttcgattaatagatgaattaaatagatgtttcatgctaaactacaattagcattagtagagtaactagtaataaaaatttaagc |
13773927 |
T |
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| Q |
297 |
tagataagcaagaac |
311 |
Q |
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| T |
13773928 |
tagataagcaagaac |
13773942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 272 - 402
Target Start/End: Complemental strand, 16855040 - 16854911
Alignment:
| Q |
272 |
agtaactagtaataaaaatttaagctagataagcaagaactagaaatttattcaacataattgcatttcgatttatacatttaaatgtgttggtaaacaa |
371 |
Q |
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| T |
16855040 |
agtaactagtaa-aaaaatttaagctagataagcaagaactaaaaatttattcaacataattgcatttcgatttatacattcaaatgtgttggtaaacaa |
16854942 |
T |
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| Q |
372 |
taactaaaaatttattcaatggttaaataac |
402 |
Q |
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| T |
16854941 |
taactaaaaatttattcaatggttaaataac |
16854911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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