View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_29 (Length: 396)
Name: NF3547_low_29
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_29 |
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| [»] scaffold1343 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 191 - 386
Target Start/End: Complemental strand, 45783285 - 45783090
Alignment:
| Q |
191 |
ccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatactatttatatca |
290 |
Q |
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| T |
45783285 |
ccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatactatttatatca |
45783186 |
T |
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| Q |
291 |
aaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtg |
386 |
Q |
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| T |
45783185 |
aaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtg |
45783090 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 45783458 - 45783389
Alignment:
| Q |
18 |
gttattatcacaagatgtaaccagtgctatgaaataaagaaagttagaagtttccttgatatggatagta |
87 |
Q |
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| T |
45783458 |
gttattatcacaagatgtaaccagtgctatgaaataaagaaagttagaagtttccttgatatggatagta |
45783389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1343 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1343
Description:
Target: scaffold1343; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 261 - 327
Alignment:
| Q |
191 |
ccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttca |
257 |
Q |
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| T |
261 |
ccataaaccaataaaatcagatgcctaaagaaaaactgataatgaactagttttctaattaacttca |
327 |
T |
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