View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_30 (Length: 393)
Name: NF3547_low_30
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 4756651 - 4757025
Alignment:
| Q |
1 |
taaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaatctcaaattctgaa |
100 |
Q |
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| T |
4756651 |
taaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaatctcaaattctgaa |
4756750 |
T |
|
| Q |
101 |
cacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgctgtgaaacatttag |
200 |
Q |
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| T |
4756751 |
cacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattagtctcattgaggatagtgctgtgaaacatttag |
4756850 |
T |
|
| Q |
201 |
aagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcatttcttctgatcgtga |
300 |
Q |
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| T |
4756851 |
aagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcatttcttctgatcgtga |
4756950 |
T |
|
| Q |
301 |
tcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatct |
375 |
Q |
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| T |
4756951 |
tcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatct |
4757025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 346
Target Start/End: Original strand, 4748878 - 4749158
Alignment:
| Q |
63 |
caggtaaaagatcattccatggaatctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaactta |
162 |
Q |
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| T |
4748878 |
cagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtcacgaa---ttgtacaatta |
4748974 |
T |
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| Q |
163 |
tattggtctcattgaggatagtgctgtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgctttt |
262 |
Q |
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|||||||||||| || |||| || |||||| |||||||||| | |||||||| ||||||||| ||||||||| |||||| | |||||| ||||| |
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| T |
4748975 |
tattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggccaaaaagttcactttt |
4749074 |
T |
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| Q |
263 |
gaagtcatcactaccatcttcatttcttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgctt |
346 |
Q |
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| T |
4749075 |
gatgtcatcacttctgtcttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgctt |
4749158 |
T |
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