View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_31 (Length: 383)
Name: NF3547_low_31
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 44966778 - 44966423
Alignment:
| Q |
17 |
atcttgtgtaagtatttactgcaagttttgatactgaatagtcagtaaaagtttgaggccaccctcctgttttccaacttccatcttctatttgttgtag |
116 |
Q |
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| T |
44966778 |
atcttgtgtaagtatttactgcaagttttgatactgaatagtcagtaaaagtttgaggccaccctcctgttttccaacttccatcttctatttgttgtag |
44966679 |
T |
|
| Q |
117 |
aaaattatttatagtttcatcaattagttcctctgaaagagattccacatcacttagtttctccctcaattcctcattttctattctctgtaacacaatc |
216 |
Q |
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| T |
44966678 |
aaaattatttatagtttcatcaattagttcctctgaaagagattccacatcacttagtttctccctcaattcctcattttctattctctgtaacacaatc |
44966579 |
T |
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| Q |
217 |
aagttatagttaatcagttttgcatttctcataatttgagaattaagagtgtacatacaaattcatcattgaaattgtaagttccgtccaatagtctctt |
316 |
Q |
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| T |
44966578 |
aagttatagttaatcagttttgcatttctcataatttgagaattaagagtgtacatacaaattcatcattgaaattgtaagttccgtccaatagtctcct |
44966479 |
T |
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| Q |
317 |
gctaattgggaaatatgtccctaaaattgtaaaatgtcattcaaaatgattcctat |
372 |
Q |
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| T |
44966478 |
gctaattgggaaatatgtccctaaaattataaaatgtcattcaaaatgattcctat |
44966423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 32244915 - 32244871
Alignment:
| Q |
320 |
aattgggaaatatgtccctaaaattgtaaaatgtcattcaaaatg |
364 |
Q |
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| T |
32244915 |
aattggcaaatatatctccaaaattgtaaaatgtcattcaaaatg |
32244871 |
T |
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