View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_33 (Length: 355)
Name: NF3547_low_33
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 13773960 - 13774294
Alignment:
| Q |
6 |
cagagacagtagttggttctcctaattggtaatcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccatccaatgtattagg |
105 |
Q |
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| T |
13773960 |
cagaaacagtagttggttctcctaattggtagtcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccttctaatgtattagg |
13774059 |
T |
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| Q |
106 |
gtttggtgcatttttgttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatga |
205 |
Q |
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| T |
13774060 |
gtttggtgcatttttattgaaccatttttcaaagccatctttgcatcctaatggtgaactatcttgcttgattgatataattgaagctcctctatgatga |
13774159 |
T |
|
| Q |
206 |
atttgttgtggataatttgatccatatcccaccatgtaactcatttgttttggattagaacccaatatgtagtccacctataatgttgtgtccacggaaa |
305 |
Q |
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| T |
13774160 |
atttgttgtggataatttgatccatatcccaccatgtaactcatctgttttggattagaacccaatatgtagtccacctataatgttgtgtccacggaaa |
13774259 |
T |
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| Q |
306 |
aaat----tagcaaattaaacatcgaacatatgaa |
336 |
Q |
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| T |
13774260 |
aaaaaaaatagtgaattaaacatcgaacatatgaa |
13774294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 13764119 - 13764398
Alignment:
| Q |
13 |
agtagttggttctcctaattggtaatcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccatccaatgtattagggtttggt |
112 |
Q |
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| T |
13764119 |
agtagttggctcccctaattgaaaatcattcctactatcagtaaaaccatcattttgatctgaactcacaactgctccttctaatatattagggtttggt |
13764218 |
T |
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| Q |
113 |
gcatttttgttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatgaatttgtt |
212 |
Q |
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| T |
13764219 |
gcatttttattgaaccatttttgaataccatcttgacatgtaactggtgcattatcatctttgattgatacaattgatgatcctctatgatgaatttgtt |
13764318 |
T |
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| Q |
213 |
gtggataatttgatccatatcccaccatgtaactcatttgttttggattagaacccaatatgtagtccacctataatgtt |
292 |
Q |
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| T |
13764319 |
ttggataatttgatccatatcccaccatgtaactcatatttcttggattagaacccaaaatgtagtccatctaaaatgtt |
13764398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 17264568 - 17264695
Alignment:
| Q |
122 |
ttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatgaatttgttgtggataat |
221 |
Q |
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||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17264568 |
ttgaaccatttttcaaagccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctacgatgaatttgttgtggataac |
17264667 |
T |
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| Q |
222 |
ttgatccatatcccaccatgtaactcat |
249 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
17264668 |
ttgttccatatcccaccatgtaactcat |
17264695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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