View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_low_35 (Length: 352)

Name: NF3547_low_35
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_low_35
NF3547_low_35
[»] chr3 (4 HSPs)
chr3 (89-352)||(20751055-20751318)
chr3 (172-352)||(20755640-20755823)
chr3 (1-48)||(20750967-20751014)
chr3 (222-343)||(20799511-20799632)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 89 - 352
Target Start/End: Original strand, 20751055 - 20751318
Alignment:
Q  89 tagagtatcctcaaacaactgcataaactaattttttccaaattattttcaattgttaacaaattacaacnnnnnnnnnnnnnttgaagagactagttta 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |             |||||||||||||||||    
T  20751055 tagagtatcctaaaacaactgcataaactaattttttccaaattattttcaattgttaacaaataacagcaaaaaagtaaaaattgaagagactagttta 20751154  T
Q  189 atatttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20751155 atatttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggct 20751254  T
Q  289 gactcagtaggatggactggaacccaaaaaatatggtctggtctattggcacaaaggcttgaaa 352  Q
    | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  20751255 gcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaa 20751318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 352
Target Start/End: Original strand, 20755640 - 20755823
Alignment:
Q  172 ttgaagagactagtttaata---tttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctat 268  Q
    |||||| |||||||||||||   ||| || ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| |||    
T  20755640 ttgaagggactagtttaatactatttaacaattcaaagagctagtagttgttccatattaataggagatgtgtattttgaaggtccattataaagtttat 20755739  T
Q  269 caacaaagatacgcatggctgactcagtaggatggactggaacccaaaaaatatggtctggtctattggcacaaaggcttgaaa 352  Q
    | |||||  | ||  |||||| |||||||||||| | | || ||||||| ||||||||| ||||||| | ||||| | ||||||    
T  20755740 ccacaaaagtgcgtgtggctgcctcagtaggatgaaattgatcccaaaatatatggtcttgtctattagaacaaatgattgaaa 20755823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20750967 - 20751014
Alignment:
Q  1 actcttaaaagatacattctccttctactgggttgcactacaattgtg 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20750967 actcttaaaagatacattctccttctactgggttgcactacaattgtg 20751014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 20799511 - 20799632
Alignment:
Q  222 catattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgactcagtaggatggactggaacccaaaaaata 321  Q
    |||||||| |||| ||||||||| ||| |||||||| ||||||||||| ||||  || ||  |  ||| ||||||||||||||||| | ||||||| |||    
T  20799511 catattaacaggagatgtgtattgtgacggtccattataaagtctatcgacaattatgcgagttactgcctcagtaggatggactgaatcccaaaagata 20799610  T
Q  322 tggtctggtctattggcacaaa 343  Q
    |||||| ||||||||| |||||    
T  20799611 tggtcttgtctattggtacaaa 20799632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University